miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 5' -62.9 NC_002794.1 + 195167 0.66 0.6573
Target:  5'- ---cCGCCGUCCaGCUCUccuugcccgggcacaGCGCCGUc- -3'
miRNA:   3'- aucaGCGGCAGG-CGAGG---------------CGCGGCGug -5'
10699 5' -62.9 NC_002794.1 + 195106 0.66 0.663089
Target:  5'- aAGUaCGgCGUCuCGUgcgcCCGCGgCGCGCg -3'
miRNA:   3'- aUCA-GCgGCAG-GCGa---GGCGCgGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 194853 0.78 0.130444
Target:  5'- cAGcCGCacCGUCUGC-CCGCGCCGCGCg -3'
miRNA:   3'- aUCaGCG--GCAGGCGaGGCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 194435 0.68 0.544871
Target:  5'- ---aCGUCGUCCGCccccggCCGCuccuuaaaccaguaGCCGCGCu -3'
miRNA:   3'- aucaGCGGCAGGCGa-----GGCG--------------CGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 194043 0.67 0.595439
Target:  5'- ---cCGCCG-CCGCcgCCGCcGCCGC-Cg -3'
miRNA:   3'- aucaGCGGCaGGCGa-GGCG-CGGCGuG- -5'
10699 5' -62.9 NC_002794.1 + 193802 0.66 0.634092
Target:  5'- ---aCGCCGgcgcCCGCUCgucugGCGCCGaCGCg -3'
miRNA:   3'- aucaGCGGCa---GGCGAGg----CGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 193390 0.68 0.528928
Target:  5'- -cGcCGUCGUCCGCcucgcgcucgccUCCGCcGCCGC-Cg -3'
miRNA:   3'- auCaGCGGCAGGCG------------AGGCG-CGGCGuG- -5'
10699 5' -62.9 NC_002794.1 + 193295 1.07 0.001104
Target:  5'- gUAGUCGCCGUCCGCUCCGCGCCGCACg -3'
miRNA:   3'- -AUCAGCGGCAGGCGAGGCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 193157 0.67 0.58582
Target:  5'- cAG-CGCC-UCCagcagcaccaGC-CCGCGCCGCGCc -3'
miRNA:   3'- aUCaGCGGcAGG----------CGaGGCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 192630 0.68 0.501235
Target:  5'- cAGUCgGgCGgCCGCUccagCCGCGCCGcCGCg -3'
miRNA:   3'- aUCAG-CgGCaGGCGA----GGCGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 192411 0.66 0.67272
Target:  5'- gUAGUCGaaaCG-CCGCgacgggUCCGCGgCCgGCGCg -3'
miRNA:   3'- -AUCAGCg--GCaGGCG------AGGCGC-GG-CGUG- -5'
10699 5' -62.9 NC_002794.1 + 192308 0.68 0.519631
Target:  5'- ---gCGCuCGUCCGCgcucgCCGCcGCCGcCGCu -3'
miRNA:   3'- aucaGCG-GCAGGCGa----GGCG-CGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 190561 0.69 0.474197
Target:  5'- -cGUCGCCGacagcaCCGCgaacggguagcUCuCGCGCCGCAg -3'
miRNA:   3'- auCAGCGGCa-----GGCG-----------AG-GCGCGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 190183 0.7 0.41416
Target:  5'- ---cCGCCGcgCCaccuccacgcGCUCCaGCGCCGCGCg -3'
miRNA:   3'- aucaGCGGCa-GG----------CGAGG-CGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 190112 0.7 0.439329
Target:  5'- ---cCGCCGUCCGCgCCGaagcgGuCCGCGCg -3'
miRNA:   3'- aucaGCGGCAGGCGaGGCg----C-GGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 189873 0.69 0.489432
Target:  5'- -cGUCGCCGccgaccggcCCGCUCgggcccgccgucagCGcCGCCGCGCg -3'
miRNA:   3'- auCAGCGGCa--------GGCGAG--------------GC-GCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 188586 0.67 0.614742
Target:  5'- ---aCGcCCG-CCGCUCCacggccgccuuGCGCCGCAg -3'
miRNA:   3'- aucaGC-GGCaGGCGAGG-----------CGCGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 188331 0.74 0.241947
Target:  5'- -cGUCGCCG-CCGCcggCgGCGCCGuCGCg -3'
miRNA:   3'- auCAGCGGCaGGCGa--GgCGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 187842 0.66 0.663089
Target:  5'- cGGcgCGCCGaggGCUCUGCccaGCCGCGCg -3'
miRNA:   3'- aUCa-GCGGCaggCGAGGCG---CGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 187579 0.66 0.634092
Target:  5'- ---cCGCCGUCgGCgcggCCGCcGUCGCGa -3'
miRNA:   3'- aucaGCGGCAGgCGa---GGCG-CGGCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.