miRNA display CGI


Results 1 - 20 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 195587 0.7 0.417868
Target:  5'- cCGCCggaCCGGCcgacGCGCC--CCCGCGCUg -3'
miRNA:   3'- -GCGGa--GGUCGu---CGUGGucGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 195215 0.8 0.087167
Target:  5'- cCGCCagCuGCGGCAgCAGCCCGCGCg -3'
miRNA:   3'- -GCGGagGuCGUCGUgGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 195167 0.69 0.477898
Target:  5'- cCGCCgUCCAGCucuccuuGC-CCGGgCacaGCGCCg -3'
miRNA:   3'- -GCGG-AGGUCGu------CGuGGUCgGg--CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 195091 0.7 0.415398
Target:  5'- uGCC-CCAGCAGCAgaaaguacggcgucUCGugcGCCCGCGgCg -3'
miRNA:   3'- gCGGaGGUCGUCGU--------------GGU---CGGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 194951 0.68 0.532542
Target:  5'- aCGUCgUCAGCAGCggcacgaacGCCGGCUCguacaggcacaGCGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCG---------UGGUCGGG-----------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194915 0.67 0.57971
Target:  5'- uCGCCgaCAGCAgcggccGCACCAGCuCCGaCGgCg -3'
miRNA:   3'- -GCGGagGUCGU------CGUGGUCG-GGC-GCgG- -5'
10700 3' -63.4 NC_002794.1 + 194846 0.9 0.018777
Target:  5'- gCGUCUCCAGCcGCACCGucuGCCCGCGCCg -3'
miRNA:   3'- -GCGGAGGUCGuCGUGGU---CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194633 0.69 0.443045
Target:  5'- aCGCCUgguccaCCAcCAGCACCuGCgucggCUGCGCCg -3'
miRNA:   3'- -GCGGA------GGUcGUCGUGGuCG-----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194527 0.85 0.043868
Target:  5'- cCGCCggcCCAGCAGCGCCGccagcacGCCCGCGCg -3'
miRNA:   3'- -GCGGa--GGUCGUCGUGGU-------CGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 194471 0.81 0.074795
Target:  5'- cCGCgCUCCAGCGGCuccuCCAGCcgccccuCCGCGCCc -3'
miRNA:   3'- -GCG-GAGGUCGUCGu---GGUCG-------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194384 0.7 0.393581
Target:  5'- aGCCacaCCAGCuGCGCC-GCCCGgucguucgcgucCGCCa -3'
miRNA:   3'- gCGGa--GGUCGuCGUGGuCGGGC------------GCGG- -5'
10700 3' -63.4 NC_002794.1 + 194343 0.67 0.560706
Target:  5'- gGCuCUCCgacGGgGGCGCCAGgaaccgcuCCCGCGUg -3'
miRNA:   3'- gCG-GAGG---UCgUCGUGGUC--------GGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 194290 0.75 0.215588
Target:  5'- gCGCCacgUCCAGUcguccAGCGCCAGCgccugccgcagcggaUCGCGCCa -3'
miRNA:   3'- -GCGG---AGGUCG-----UCGUGGUCG---------------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194144 0.75 0.213107
Target:  5'- gGCCg-CAGCAGCGCCcgcgAGCCCugccggcGCGCCu -3'
miRNA:   3'- gCGGagGUCGUCGUGG----UCGGG-------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194022 0.75 0.194585
Target:  5'- cCGCCgCCGcCGGCGCCucGCCCGcCGCCg -3'
miRNA:   3'- -GCGGaGGUcGUCGUGGu-CGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 193933 0.7 0.417868
Target:  5'- gGCCaCCGcCGGCuCCGGCCC-CGCCg -3'
miRNA:   3'- gCGGaGGUcGUCGuGGUCGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 193737 0.68 0.511298
Target:  5'- uCGCCgCCcGCGGCuucggcgagcgaccGCCGGCCC-CGCUc -3'
miRNA:   3'- -GCGGaGGuCGUCG--------------UGGUCGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 193438 0.67 0.560706
Target:  5'- aGCCgUCCGGCA-CGCC-GCCCaCGCa -3'
miRNA:   3'- gCGG-AGGUCGUcGUGGuCGGGcGCGg -5'
10700 3' -63.4 NC_002794.1 + 193410 0.67 0.541878
Target:  5'- uCGCCUCC-GCcGcCGCC-GCCCGuCGUCc -3'
miRNA:   3'- -GCGGAGGuCGuC-GUGGuCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 193288 0.7 0.417868
Target:  5'- uGCg-CCGGUAGuCGCCGuccGCuCCGCGCCg -3'
miRNA:   3'- gCGgaGGUCGUC-GUGGU---CG-GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.