miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 185175 0.74 0.66007
Target:  5'- --cGGCGCGGCGcGGucggcgcGGUCGGCGCg -3'
miRNA:   3'- uucUCGCGCUGCuUCuu-----CUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 141426 0.74 0.667213
Target:  5'- -cGGGgGCGGCGggGGcgccgggggcgccgGGAgCGGCGCg -3'
miRNA:   3'- uuCUCgCGCUGCuuCU--------------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 46312 0.74 0.68044
Target:  5'- -cGAGCGCGGCGgcGA----CGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGCuuCUucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 143309 0.74 0.69057
Target:  5'- --cAGCGCGGCGGgauGGAAG-UCGGuCGCg -3'
miRNA:   3'- uucUCGCGCUGCU---UCUUCuAGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 102449 0.74 0.69057
Target:  5'- -cGAGC-UGACGcucGAGGAGAUgCGGCGCg -3'
miRNA:   3'- uuCUCGcGCUGC---UUCUUCUA-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 72432 0.73 0.700651
Target:  5'- gAGGAGC-CGGCGGAG-GGAccggCGGCGCc -3'
miRNA:   3'- -UUCUCGcGCUGCUUCuUCUa---GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 112125 0.73 0.700651
Target:  5'- --cGGCGCGGgGAGGuAGAUCGGCa- -3'
miRNA:   3'- uucUCGCGCUgCUUCuUCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 141351 0.73 0.700651
Target:  5'- cGAGAGCaGCGACGAGagcggcGGAGAgaaCGGCGa -3'
miRNA:   3'- -UUCUCG-CGCUGCUU------CUUCUa--GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 147077 0.73 0.700651
Target:  5'- -cGGGCGCccgguccaagGACGAAGgcG-UCGGCGCc -3'
miRNA:   3'- uuCUCGCG----------CUGCUUCuuCuAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 139987 0.73 0.720631
Target:  5'- -uGAGCGCGACGcGGGA---CGGUGCg -3'
miRNA:   3'- uuCUCGCGCUGCuUCUUcuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 126701 0.73 0.730512
Target:  5'- gAGGGGCGCcgcggacucggGGCGAGGggGGUgGGUGg -3'
miRNA:   3'- -UUCUCGCG-----------CUGCUUCuuCUAgCCGCg -5'
10701 3' -53.9 NC_002794.1 + 129871 0.73 0.730512
Target:  5'- gGGGGGCGCacgagaagugGACGcGGGAGAgcgaaCGGCGCu -3'
miRNA:   3'- -UUCUCGCG----------CUGCuUCUUCUa----GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 61161 0.73 0.740307
Target:  5'- -cGAGCGCG-CGGuccGGAUCGGCGg -3'
miRNA:   3'- uuCUCGCGCuGCUucuUCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 41958 0.73 0.740307
Target:  5'- -cGuGCGCGGCcuGGAAGGUCGGCu- -3'
miRNA:   3'- uuCuCGCGCUGcuUCUUCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 127127 0.72 0.750008
Target:  5'- -cGAGcCGCuGAUGGAGAcGAaCGGCGCg -3'
miRNA:   3'- uuCUC-GCG-CUGCUUCUuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 107582 0.72 0.750008
Target:  5'- cGGAGa-CGGCGGAGAAGA-CGGCGg -3'
miRNA:   3'- uUCUCgcGCUGCUUCUUCUaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 94044 0.72 0.750008
Target:  5'- cGAGAGCgGCGGCGGugcGggGG-CGGCGg -3'
miRNA:   3'- -UUCUCG-CGCUGCUu--CuuCUaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 42645 0.72 0.750008
Target:  5'- cGGAGuCGCGGcCGAAGccGA-CGGCGCc -3'
miRNA:   3'- uUCUC-GCGCU-GCUUCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 99590 0.72 0.759605
Target:  5'- gGAGGGCGCGGCGgcGgcGcgCGcucGCGCc -3'
miRNA:   3'- -UUCUCGCGCUGCuuCuuCuaGC---CGCG- -5'
10701 3' -53.9 NC_002794.1 + 142577 0.72 0.77752
Target:  5'- aGAGcAGCGCGAUGGgcgcgcccuGGggGAUgacgagcUGGCGCa -3'
miRNA:   3'- -UUC-UCGCGCUGCU---------UCuuCUA-------GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.