miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 192217 1.1 0.005273
Target:  5'- gAAGAGCGCGACGAAGAAGAUCGGCGCu -3'
miRNA:   3'- -UUCUCGCGCUGCUUCUUCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 191925 0.71 0.83982
Target:  5'- --cGGCGaaGACG-AGAGGAUCGGCGg -3'
miRNA:   3'- uucUCGCg-CUGCuUCUUCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 191881 0.82 0.2847
Target:  5'- gGAGGGgGCGGCGGAGGcgGGAUCGGCa- -3'
miRNA:   3'- -UUCUCgCGCUGCUUCU--UCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 190986 0.67 0.95909
Target:  5'- cAGGcAGCGCGGCGAcGGcgucgcGAUCGGcCGUu -3'
miRNA:   3'- -UUC-UCGCGCUGCUuCUu-----CUAGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 185623 0.68 0.927944
Target:  5'- -cGAGCGaCGGCGAGcGAGAcucgagCGGCGg -3'
miRNA:   3'- uuCUCGC-GCUGCUUcUUCUa-----GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 185175 0.74 0.66007
Target:  5'- --cGGCGCGGCGcGGucggcgcGGUCGGCGCg -3'
miRNA:   3'- uucUCGCGCUGCuUCuu-----CUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 182457 0.76 0.528249
Target:  5'- gGAGAGCGCGGCGGu---GcgCGGCGUc -3'
miRNA:   3'- -UUCUCGCGCUGCUucuuCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 181221 0.66 0.979438
Target:  5'- --aAGCaGCGACGAGauccGgcGA-CGGCGCg -3'
miRNA:   3'- uucUCG-CGCUGCUU----CuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 180807 0.69 0.904299
Target:  5'- -uGAGCGaCGucucggacucuggGCGggGAGGAgccCGGCGUc -3'
miRNA:   3'- uuCUCGC-GC-------------UGCuuCUUCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 180072 0.67 0.947146
Target:  5'- cAGAGUcaaGCGGCGGAcGGuAUCGGUGCg -3'
miRNA:   3'- uUCUCG---CGCUGCUUcUUcUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 177859 0.7 0.85577
Target:  5'- -cGAGCGCGgccACGAcGGAGAUCGGa-- -3'
miRNA:   3'- uuCUCGCGC---UGCUuCUUCUAGCCgcg -5'
10701 3' -53.9 NC_002794.1 + 177526 0.69 0.91691
Target:  5'- -cGAG-GUGACaAGGAGGggUGGCGCg -3'
miRNA:   3'- uuCUCgCGCUGcUUCUUCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 171125 0.69 0.91691
Target:  5'- -cGAGgG-GGCGAGGAcGAUCcGGUGCa -3'
miRNA:   3'- uuCUCgCgCUGCUUCUuCUAG-CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 159894 0.69 0.898577
Target:  5'- gGAGGGCGgGguaGCGAAGGguagguGGGUCGGCu- -3'
miRNA:   3'- -UUCUCGCgC---UGCUUCU------UCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 155212 0.71 0.831558
Target:  5'- ---cGCGgGACGggGucGAuUCGGUGCa -3'
miRNA:   3'- uucuCGCgCUGCuuCuuCU-AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 154188 0.68 0.922547
Target:  5'- cAGGGcCGcCGACGAucuGGAGAcgcUGGCGCg -3'
miRNA:   3'- uUCUC-GC-GCUGCUu--CUUCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 151710 0.69 0.891999
Target:  5'- -cGAGCGCGccagucgcGCGAAGGAcgucGUCGGcCGCc -3'
miRNA:   3'- uuCUCGCGC--------UGCUUCUUc---UAGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 149460 0.69 0.904924
Target:  5'- gAAGGGgGCGgucgaggaGCGAGGggGggCGGCa- -3'
miRNA:   3'- -UUCUCgCGC--------UGCUUCuuCuaGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 148174 0.75 0.58849
Target:  5'- aGGGGGuCGCGACgGAAGGAGGggggucucCGGCGCc -3'
miRNA:   3'- -UUCUC-GCGCUG-CUUCUUCUa-------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 148132 0.67 0.962621
Target:  5'- -cGGGCGCGGggccgcCGggGcGAGggCGGuCGCg -3'
miRNA:   3'- uuCUCGCGCU------GCuuC-UUCuaGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.