miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 5' -57.6 NC_002794.1 + 82047 0.69 0.765398
Target:  5'- gCGGCGGCgGCGGcggCG-UCGUC-CUCGg -3'
miRNA:   3'- -GCUGCCG-CGCCaa-GCgAGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 4266 0.69 0.792034
Target:  5'- uCGAuCGGUGaCGGUggucuuucUCGCUCGguggugguuuuUCUCUCGc -3'
miRNA:   3'- -GCU-GCCGC-GCCA--------AGCGAGC-----------AGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 70341 0.69 0.792034
Target:  5'- cCGACGGC-CGGgcgccCGCUCGUCcgcccacccgCUCGc -3'
miRNA:   3'- -GCUGCCGcGCCaa---GCGAGCAGa---------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 121586 0.69 0.792034
Target:  5'- uGACgGGCGCGGggUCGUUCGgcgacgaUUUCGa -3'
miRNA:   3'- gCUG-CCGCGCCa-AGCGAGCag-----AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 91230 0.68 0.817484
Target:  5'- gGACGGCGCGGcg-GC-CGUCgggcugcgCUCGc -3'
miRNA:   3'- gCUGCCGCGCCaagCGaGCAGa-------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 21669 0.68 0.841548
Target:  5'- uGGCGGCgGCGGUauUCGCcCG-CUC-CGg -3'
miRNA:   3'- gCUGCCG-CGCCA--AGCGaGCaGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 14702 0.68 0.841548
Target:  5'- uGACGGCGUGGggagcgcUGCUCGcggcuUCggCUCGg -3'
miRNA:   3'- gCUGCCGCGCCaa-----GCGAGC-----AGa-GAGC- -5'
10701 5' -57.6 NC_002794.1 + 96421 0.68 0.841548
Target:  5'- uCGAucuCGGCGCGG--CGCUCGaUCUCa-- -3'
miRNA:   3'- -GCU---GCCGCGCCaaGCGAGC-AGAGagc -5'
10701 5' -57.6 NC_002794.1 + 35764 0.68 0.841548
Target:  5'- aCGACGuCGCGGcaccgUCGCcggcgUCGUCUC-CGg -3'
miRNA:   3'- -GCUGCcGCGCCa----AGCG-----AGCAGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 118292 0.68 0.84923
Target:  5'- gGACcGCGcCGGgcgcgUCGCUCGUCgUCgUCGu -3'
miRNA:   3'- gCUGcCGC-GCCa----AGCGAGCAG-AG-AGC- -5'
10701 5' -57.6 NC_002794.1 + 176209 0.68 0.856731
Target:  5'- uGGCGGauggaaGGcUCGCUCGUCUCgccCGg -3'
miRNA:   3'- gCUGCCgcg---CCaAGCGAGCAGAGa--GC- -5'
10701 5' -57.6 NC_002794.1 + 132500 0.67 0.864047
Target:  5'- aCGAUGGCGUGGcggcaUCGCUgGaC-CUCGg -3'
miRNA:   3'- -GCUGCCGCGCCa----AGCGAgCaGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 99600 0.67 0.864047
Target:  5'- gCGGCGGCGCG---CGCUCG-CgccgcCUCGg -3'
miRNA:   3'- -GCUGCCGCGCcaaGCGAGCaGa----GAGC- -5'
10701 5' -57.6 NC_002794.1 + 620 0.67 0.864047
Target:  5'- aGGCGGCcCGGUguggCGUUCGcCUCcCGu -3'
miRNA:   3'- gCUGCCGcGCCAa---GCGAGCaGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 119443 0.67 0.878099
Target:  5'- aCGGCGGCgGCGGUg-GCggCGUCgacUUCGa -3'
miRNA:   3'- -GCUGCCG-CGCCAagCGa-GCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 193282 0.67 0.891349
Target:  5'- gCGGCGuGCGcCGGUagUCGC-CGUCcgCUCc -3'
miRNA:   3'- -GCUGC-CGC-GCCA--AGCGaGCAGa-GAGc -5'
10701 5' -57.6 NC_002794.1 + 138709 0.67 0.897663
Target:  5'- gGGCGGCGUGGacUCGCgUCGagccggCUCGa -3'
miRNA:   3'- gCUGCCGCGCCa-AGCG-AGCaga---GAGC- -5'
10701 5' -57.6 NC_002794.1 + 65272 0.66 0.909654
Target:  5'- gCGGCGGCGCcuccUCGCcccccucggcgUCGUC-CUCGa -3'
miRNA:   3'- -GCUGCCGCGcca-AGCG-----------AGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 18703 0.66 0.909654
Target:  5'- aCGGCGGCgGCGGUcCGgaCGUCggagC-CGa -3'
miRNA:   3'- -GCUGCCG-CGCCAaGCgaGCAGa---GaGC- -5'
10701 5' -57.6 NC_002794.1 + 120441 0.66 0.909654
Target:  5'- aGcCGGCGUGGaaCGCcgCGUCggccuggCUCGa -3'
miRNA:   3'- gCuGCCGCGCCaaGCGa-GCAGa------GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.