Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10701 | 5' | -57.6 | NC_002794.1 | + | 193282 | 0.67 | 0.891349 |
Target: 5'- gCGGCGuGCGcCGGUagUCGC-CGUCcgCUCc -3' miRNA: 3'- -GCUGC-CGC-GCCA--AGCGaGCAGa-GAGc -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 192252 | 1.08 | 0.003929 |
Target: 5'- cCGACGGCGCGGUUCGCUCGUCUCUCGc -3' miRNA: 3'- -GCUGCCGCGCCAAGCGAGCAGAGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 186301 | 0.73 | 0.553928 |
Target: 5'- aGGCGGCcggucgccGCGGcgCGCUCGUC-CUCc -3' miRNA: 3'- gCUGCCG--------CGCCaaGCGAGCAGaGAGc -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 185401 | 0.7 | 0.756292 |
Target: 5'- aCGAgGGCGCGGgcccgacCGC-CGUCgaCUCGa -3' miRNA: 3'- -GCUgCCGCGCCaa-----GCGaGCAGa-GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 179125 | 0.71 | 0.661038 |
Target: 5'- gGGC-GCGCGGUcggUCGaUCGUCUCUCc -3' miRNA: 3'- gCUGcCGCGCCA---AGCgAGCAGAGAGc -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 176209 | 0.68 | 0.856731 |
Target: 5'- uGGCGGauggaaGGcUCGCUCGUCUCgccCGg -3' miRNA: 3'- gCUGCCgcg---CCaAGCGAGCAGAGa--GC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 151736 | 0.66 | 0.915327 |
Target: 5'- uCGuCGGcCGcCGGUcgccucgcgCGCUCGUC-CUCGa -3' miRNA: 3'- -GCuGCC-GC-GCCAa--------GCGAGCAGaGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 149280 | 0.73 | 0.582879 |
Target: 5'- cCGGCGGCGCGGcg-GCUCG-CUCaCGg -3' miRNA: 3'- -GCUGCCGCGCCaagCGAGCaGAGaGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 138709 | 0.67 | 0.897663 |
Target: 5'- gGGCGGCGUGGacUCGCgUCGagccggCUCGa -3' miRNA: 3'- gCUGCCGCGCCa-AGCG-AGCaga---GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 138116 | 0.73 | 0.573188 |
Target: 5'- gGAgGGCGUGGU--GCUCGUCgccggUCUCGg -3' miRNA: 3'- gCUgCCGCGCCAagCGAGCAG-----AGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 134127 | 0.69 | 0.765398 |
Target: 5'- cCGACGGCGCGGcgaGCgCGgaagCUCGg -3' miRNA: 3'- -GCUGCCGCGCCaagCGaGCaga-GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 132500 | 0.67 | 0.864047 |
Target: 5'- aCGAUGGCGUGGcggcaUCGCUgGaC-CUCGg -3' miRNA: 3'- -GCUGCCGCGCCa----AGCGAgCaGaGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 127613 | 0.66 | 0.915327 |
Target: 5'- -aGCGGCGCGGacCGgaCUCGUCg-UCGa -3' miRNA: 3'- gcUGCCGCGCCaaGC--GAGCAGagAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 127362 | 0.79 | 0.27862 |
Target: 5'- gCGGCGGCGCGGc-CGCUCGUgUCggCGg -3' miRNA: 3'- -GCUGCCGCGCCaaGCGAGCAgAGa-GC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 122790 | 0.7 | 0.747085 |
Target: 5'- uCGACGGCGUGGagUUCGC-CGUCa---- -3' miRNA: 3'- -GCUGCCGCGCC--AAGCGaGCAGagagc -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 121586 | 0.69 | 0.792034 |
Target: 5'- uGACgGGCGCGGggUCGUUCGgcgacgaUUUCGa -3' miRNA: 3'- gCUG-CCGCGCCa-AGCGAGCag-----AGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 120441 | 0.66 | 0.909654 |
Target: 5'- aGcCGGCGUGGaaCGCcgCGUCggccuggCUCGa -3' miRNA: 3'- gCuGCCGCGCCaaGCGa-GCAGa------GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 119443 | 0.67 | 0.878099 |
Target: 5'- aCGGCGGCgGCGGUg-GCggCGUCgacUUCGa -3' miRNA: 3'- -GCUGCCG-CGCCAagCGa-GCAGa--GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 118292 | 0.68 | 0.84923 |
Target: 5'- gGACcGCGcCGGgcgcgUCGCUCGUCgUCgUCGu -3' miRNA: 3'- gCUGcCGC-GCCa----AGCGAGCAG-AG-AGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 117707 | 0.7 | 0.747085 |
Target: 5'- gCGACGGCGUGGca-GCUccgCGUCUgCUCc -3' miRNA: 3'- -GCUGCCGCGCCaagCGA---GCAGA-GAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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