miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 192637 0.7 0.504895
Target:  5'- -gCGGCCGCUCcAGccgcgccGCCGCGcGCUCg -3'
miRNA:   3'- gaGCCGGCGAGcUCc------UGGCGCuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 191811 1.09 0.001155
Target:  5'- gCUCGGCCGCUCGAGGACCGCGAGCUCg -3'
miRNA:   3'- -GAGCCGGCGAGCUCCUGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 189456 0.66 0.742256
Target:  5'- gUCGGCCaGCacgCGccgaaAGG-CCGCGGGCgUCg -3'
miRNA:   3'- gAGCCGG-CGa--GC-----UCCuGGCGCUCG-AG- -5'
10702 5' -61.9 NC_002794.1 + 189395 0.67 0.685907
Target:  5'- gCUCGGCCacguaGUcCGccAGGGCCaGCGGGUUCu -3'
miRNA:   3'- -GAGCCGG-----CGaGC--UCCUGG-CGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 187839 0.74 0.273584
Target:  5'- gCUCGGCgCGC-CGAGGgcucugcccaGCCGCGcgcGGCUCg -3'
miRNA:   3'- -GAGCCG-GCGaGCUCC----------UGGCGC---UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 187472 0.66 0.742256
Target:  5'- gCUCGGCgCGCgccgggcCGAGGacgagGCCGCGcaGGCg- -3'
miRNA:   3'- -GAGCCG-GCGa------GCUCC-----UGGCGC--UCGag -5'
10702 5' -61.9 NC_002794.1 + 185480 0.66 0.742256
Target:  5'- -gCGGCCGCggcgaGGGGACCGCcuauauauucGAuCUCc -3'
miRNA:   3'- gaGCCGGCGag---CUCCUGGCG----------CUcGAG- -5'
10702 5' -61.9 NC_002794.1 + 185341 0.67 0.676332
Target:  5'- gUCGaCCGCUCGcGcGccGCCGCGAGCg- -3'
miRNA:   3'- gAGCcGGCGAGCuC-C--UGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 183174 0.66 0.733034
Target:  5'- -cCGaGCCGgUCGGGGACCGaGAcGCg- -3'
miRNA:   3'- gaGC-CGGCgAGCUCCUGGCgCU-CGag -5'
10702 5' -61.9 NC_002794.1 + 180896 0.7 0.495787
Target:  5'- uCUCGGCCGCg-GAcucGGCCGCGGuCUCg -3'
miRNA:   3'- -GAGCCGGCGagCUc--CUGGCGCUcGAG- -5'
10702 5' -61.9 NC_002794.1 + 180684 0.67 0.676332
Target:  5'- -cCGGCCGCUCccGGcGCCcgGCGGGCg- -3'
miRNA:   3'- gaGCCGGCGAGcuCC-UGG--CGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 178326 0.68 0.608803
Target:  5'- cCUCGuagaGCCGCUCuGGuGACCGCGuGGCg- -3'
miRNA:   3'- -GAGC----CGGCGAGcUC-CUGGCGC-UCGag -5'
10702 5' -61.9 NC_002794.1 + 178250 0.7 0.460142
Target:  5'- --aGGCCG-UCGAGGGaaGCGGGCUg -3'
miRNA:   3'- gagCCGGCgAGCUCCUggCGCUCGAg -5'
10702 5' -61.9 NC_002794.1 + 154331 0.67 0.676332
Target:  5'- gUCGGUCGUccCGGGuGCCGCggccGAGCUCc -3'
miRNA:   3'- gAGCCGGCGa-GCUCcUGGCG----CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 152357 0.67 0.666725
Target:  5'- -aCGGCCGCUUGGaacGGAUCgGCGAcacGCUg -3'
miRNA:   3'- gaGCCGGCGAGCU---CCUGG-CGCU---CGAg -5'
10702 5' -61.9 NC_002794.1 + 150978 0.71 0.442835
Target:  5'- cCUCGGCCGgUCu-GGA-CGaCGAGCUCg -3'
miRNA:   3'- -GAGCCGGCgAGcuCCUgGC-GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 150588 0.72 0.369808
Target:  5'- cCUCGGgCGCcCGAGGACgGcCGGGCg- -3'
miRNA:   3'- -GAGCCgGCGaGCUCCUGgC-GCUCGag -5'
10702 5' -61.9 NC_002794.1 + 147134 0.69 0.560892
Target:  5'- -aCGGCgGUUCGAgacggccccgGGGCCGCGAGggCc -3'
miRNA:   3'- gaGCCGgCGAGCU----------CCUGGCGCUCgaG- -5'
10702 5' -61.9 NC_002794.1 + 147053 0.66 0.723734
Target:  5'- -gCGGCCGgUCuaagGAcGGAgCCGCGGGCg- -3'
miRNA:   3'- gaGCCGGCgAG----CU-CCU-GGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 146687 0.72 0.40124
Target:  5'- uCUCGG-CGCUCGAGGccgACUGCggGAGCUg -3'
miRNA:   3'- -GAGCCgGCGAGCUCC---UGGCG--CUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.