miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 3' -61.4 NC_002794.1 + 195123 0.67 0.627947
Target:  5'- --cGCCCGcGGcGCGCgCGGGCUCgcguacaccaccGGACc -3'
miRNA:   3'- caaCGGGC-CC-CGCGgGUCUGAG------------UCUG- -5'
10703 3' -61.4 NC_002794.1 + 191048 1.09 0.001075
Target:  5'- aGUUGCCCGGGGCGCCCAGACUCAGACa -3'
miRNA:   3'- -CAACGGGCCCCGCGGGUCUGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 188946 0.67 0.657342
Target:  5'- -cUGUCCGGGcGUGCgCAGGUUCAGGu -3'
miRNA:   3'- caACGGGCCC-CGCGgGUCUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 186015 0.68 0.588824
Target:  5'- --cGCuCCGGGcccGgGCCCGGACcCGGGCc -3'
miRNA:   3'- caaCG-GGCCC---CgCGGGUCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 184485 0.72 0.358817
Target:  5'- --cGCgCGGGGC-CCCGGACgccCGGGCg -3'
miRNA:   3'- caaCGgGCCCCGcGGGUCUGa--GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 183728 0.66 0.705861
Target:  5'- --aGCCCGcacGCGCCCAGcaggaUCAGGCc -3'
miRNA:   3'- caaCGGGCcc-CGCGGGUCug---AGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 182013 0.67 0.627947
Target:  5'- --aGCCCGGgaccccGGCGUCCGGGCcgCcGGCg -3'
miRNA:   3'- caaCGGGCC------CCGCGGGUCUGa-GuCUG- -5'
10703 3' -61.4 NC_002794.1 + 180698 0.67 0.676858
Target:  5'- --cGCCCGgcGGGCGgaCCAuGGCUCGGGu -3'
miRNA:   3'- caaCGGGC--CCCGCg-GGU-CUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 178808 0.7 0.484641
Target:  5'- --gGCCCGGGGgGaCCgGGcACUCGGGu -3'
miRNA:   3'- caaCGGGCCCCgC-GGgUC-UGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 150584 0.73 0.329342
Target:  5'- -cUGCCCucGGGCGCCCgaGGACggcCGGGCg -3'
miRNA:   3'- caACGGGc-CCCGCGGG--UCUGa--GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 148134 0.66 0.734348
Target:  5'- --gGCgCGGGGcCGCCgGGGCgaGGGCg -3'
miRNA:   3'- caaCGgGCCCC-GCGGgUCUGagUCUG- -5'
10703 3' -61.4 NC_002794.1 + 143275 0.7 0.493787
Target:  5'- --gGCCCGGcgccGGcCGCUCGGGgUCGGGCg -3'
miRNA:   3'- caaCGGGCC----CC-GCGGGUCUgAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 141790 0.66 0.715424
Target:  5'- --cGUCCGacGGGCGCgggUCGGcCUCGGACa -3'
miRNA:   3'- caaCGGGC--CCCGCG---GGUCuGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 141441 0.68 0.588824
Target:  5'- --cGCCgGGGGCGCCgGGAg-CGGcGCg -3'
miRNA:   3'- caaCGGgCCCCGCGGgUCUgaGUC-UG- -5'
10703 3' -61.4 NC_002794.1 + 140200 0.66 0.69624
Target:  5'- --cGUCgaGGGGCGaCCCGGGC-CGGAg -3'
miRNA:   3'- caaCGGg-CCCCGC-GGGUCUGaGUCUg -5'
10703 3' -61.4 NC_002794.1 + 139342 0.71 0.431597
Target:  5'- -gUGaCCGGGGCcaggcCCCAGAC-CAGGCa -3'
miRNA:   3'- caACgGGCCCCGc----GGGUCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 129331 0.67 0.667113
Target:  5'- --cGCCCGGGGCGgcgguuUCCAGAa-CGGGg -3'
miRNA:   3'- caaCGGGCCCCGC------GGGUCUgaGUCUg -5'
10703 3' -61.4 NC_002794.1 + 126684 0.76 0.217524
Target:  5'- --gGCCCgaaucggggagggaGGGGCGCCgCGGACUCGGGg -3'
miRNA:   3'- caaCGGG--------------CCCCGCGG-GUCUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 119097 0.71 0.431597
Target:  5'- gGUUGCUgGuGGGCGUCCAGAuCggGGACg -3'
miRNA:   3'- -CAACGGgC-CCCGCGGGUCU-GagUCUG- -5'
10703 3' -61.4 NC_002794.1 + 118741 0.69 0.559761
Target:  5'- -cUGCUCGGcGCGCUCAGGCcCAGGu -3'
miRNA:   3'- caACGGGCCcCGCGGGUCUGaGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.