miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 5' -54 NC_002794.1 + 195359 0.68 0.946779
Target:  5'- aCGCCCGGaCCAGGgacucguacUGCGcGAACGa- -3'
miRNA:   3'- gGCGGGCCaGGUCU---------AUGCaCUUGUcu -5'
10703 5' -54 NC_002794.1 + 192998 0.67 0.971355
Target:  5'- cUCGCCCGGcgugugcagcgCCAGcgGCGUGuACAu- -3'
miRNA:   3'- -GGCGGGCCa----------GGUCuaUGCACuUGUcu -5'
10703 5' -54 NC_002794.1 + 191083 1.11 0.005396
Target:  5'- gCCGCCCGGUCCAGAUACGUGAACAGAc -3'
miRNA:   3'- -GGCGGGCCAGGUCUAUGCACUUGUCU- -5'
10703 5' -54 NC_002794.1 + 188940 0.68 0.954876
Target:  5'- -gGCCCGcuGUCCGG--GCGUGcGCAGGu -3'
miRNA:   3'- ggCGGGC--CAGGUCuaUGCACuUGUCU- -5'
10703 5' -54 NC_002794.1 + 183411 0.66 0.984806
Target:  5'- -aGCCaCGGgaCCAGAaGCGgGAGCGGGa -3'
miRNA:   3'- ggCGG-GCCa-GGUCUaUGCaCUUGUCU- -5'
10703 5' -54 NC_002794.1 + 154361 0.7 0.89257
Target:  5'- cCCGCgCGGUCCAGGccgcgGCGgcGGCGGGc -3'
miRNA:   3'- -GGCGgGCCAGGUCUa----UGCacUUGUCU- -5'
10703 5' -54 NC_002794.1 + 154163 0.67 0.968471
Target:  5'- uUCGCgCGGggCAGAacUACGUGAuCAGGg -3'
miRNA:   3'- -GGCGgGCCagGUCU--AUGCACUuGUCU- -5'
10703 5' -54 NC_002794.1 + 149343 0.75 0.635298
Target:  5'- aCCGgCCGGggUCgCGGggGCGUGGACGGAg -3'
miRNA:   3'- -GGCgGGCC--AG-GUCuaUGCACUUGUCU- -5'
10703 5' -54 NC_002794.1 + 147080 0.66 0.976545
Target:  5'- gCGCCCGGUCCaaGGAcgaagGCGUcGGCGc- -3'
miRNA:   3'- gGCGGGCCAGG--UCUa----UGCAcUUGUcu -5'
10703 5' -54 NC_002794.1 + 143528 0.68 0.946779
Target:  5'- gUCGCCCGcGUCCAGGaggcGCGgcacGAGCAc- -3'
miRNA:   3'- -GGCGGGC-CAGGUCUa---UGCa---CUUGUcu -5'
10703 5' -54 NC_002794.1 + 142901 0.68 0.946779
Target:  5'- gUGCCCGGcguccUCCGGGggcCG-GAGCAGGa -3'
miRNA:   3'- gGCGGGCC-----AGGUCUau-GCaCUUGUCU- -5'
10703 5' -54 NC_002794.1 + 138452 0.66 0.978865
Target:  5'- gCGCCuCGG-CCuGcgACGUGGACGuGAc -3'
miRNA:   3'- gGCGG-GCCaGGuCuaUGCACUUGU-CU- -5'
10703 5' -54 NC_002794.1 + 136877 0.67 0.962096
Target:  5'- -gGCCCGGaUCUGGA--CGUgGAGCAGGg -3'
miRNA:   3'- ggCGGGCC-AGGUCUauGCA-CUUGUCU- -5'
10703 5' -54 NC_002794.1 + 133934 0.67 0.971355
Target:  5'- gCGCCC-GUCCAGuUGCGgggUGAcCGGAa -3'
miRNA:   3'- gGCGGGcCAGGUCuAUGC---ACUuGUCU- -5'
10703 5' -54 NC_002794.1 + 130433 0.69 0.922549
Target:  5'- gCCGUCUGGUCCAGGcgucCGUGuuggGCGGc -3'
miRNA:   3'- -GGCGGGCCAGGUCUau--GCACu---UGUCu -5'
10703 5' -54 NC_002794.1 + 128681 0.73 0.74412
Target:  5'- aUCGCCgcggCGGUCCGGAggcuCG-GAACAGAc -3'
miRNA:   3'- -GGCGG----GCCAGGUCUau--GCaCUUGUCU- -5'
10703 5' -54 NC_002794.1 + 128331 0.67 0.971355
Target:  5'- cCCGCCCGGaCgCGGuggAC-UGAGCAGu -3'
miRNA:   3'- -GGCGGGCCaG-GUCua-UGcACUUGUCu -5'
10703 5' -54 NC_002794.1 + 127685 0.76 0.605114
Target:  5'- -aGCCCGGUCgGGGcgACGUGggUGGGa -3'
miRNA:   3'- ggCGGGCCAGgUCUa-UGCACuuGUCU- -5'
10703 5' -54 NC_002794.1 + 119091 0.69 0.922006
Target:  5'- gCGCCCGGuugcuggugggcgUCCAGAU-CGggGAcGCAGAa -3'
miRNA:   3'- gGCGGGCC-------------AGGUCUAuGCa-CU-UGUCU- -5'
10703 5' -54 NC_002794.1 + 115611 0.66 0.978865
Target:  5'- cUCGCCCGGcgCCGGGagGCG-GGuCAGGu -3'
miRNA:   3'- -GGCGGGCCa-GGUCUa-UGCaCUuGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.