miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 195119 0.66 0.801944
Target:  5'- cGUGCgcccGCGGCGCgCgcgggcucgcguacaCCACCGGacCCACCAc -3'
miRNA:   3'- -CAUG----UGCCGCG-G---------------GGUGGUCa-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 194790 0.7 0.56963
Target:  5'- -cGCGCGcagcggcucccaGUGCCCCACCAG-CCGCa- -3'
miRNA:   3'- caUGUGC------------CGCGGGGUGGUCaGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 194621 0.72 0.466462
Target:  5'- uGUACACcGCGCa-CGCCuGGUCCACCAc -3'
miRNA:   3'- -CAUGUGcCGCGggGUGG-UCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 194280 0.72 0.466462
Target:  5'- -cGCACGGCGCgCgCCAcguCCAGUCguCCAg -3'
miRNA:   3'- caUGUGCCGCG-G-GGU---GGUCAGguGGU- -5'
10704 3' -60.1 NC_002794.1 + 194029 0.72 0.448715
Target:  5'- -cGC-CGGCGCCUCGCCcG-CCGCCGc -3'
miRNA:   3'- caUGuGCCGCGGGGUGGuCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 193939 0.67 0.725662
Target:  5'- -cGC-CGGCuccgGCCCCGCCg--CCACCGc -3'
miRNA:   3'- caUGuGCCG----CGGGGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 193051 0.67 0.735114
Target:  5'- -cGCACaGCGCCCgCACCGG-CUgcggGCCGu -3'
miRNA:   3'- caUGUGcCGCGGG-GUGGUCaGG----UGGU- -5'
10704 3' -60.1 NC_002794.1 + 190510 0.69 0.597921
Target:  5'- --cCACGGCGUgCCCAgCCGcgugccgaucgucGUCCACCAg -3'
miRNA:   3'- cauGUGCCGCG-GGGU-GGU-------------CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 190456 0.7 0.55031
Target:  5'- cGUGCGCGGCGUcgcgcccgacgCCCACgGGUgCC-CCAc -3'
miRNA:   3'- -CAUGUGCCGCG-----------GGGUGgUCA-GGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 190407 1.08 0.001747
Target:  5'- cGUACACGGCGCCCCACCAGUCCACCAg -3'
miRNA:   3'- -CAUGUGCCGCGGGGUGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 189588 0.76 0.26905
Target:  5'- -gGC-CGGCGCCCCuuaGCCcGUCCGCCc -3'
miRNA:   3'- caUGuGCCGCGGGG---UGGuCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 189556 0.74 0.36603
Target:  5'- -cACAUGGCgGUCCCGCuCGGUCgGCCGg -3'
miRNA:   3'- caUGUGCCG-CGGGGUG-GUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 189188 0.7 0.531196
Target:  5'- --cCGCGuGCGCCCC-CCAGaaCACCAc -3'
miRNA:   3'- cauGUGC-CGCGGGGuGGUCagGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 188781 0.66 0.797637
Target:  5'- gGUGCagcgguaGCGGCcgGCCCCGCCgAGcgCCGuCCAg -3'
miRNA:   3'- -CAUG-------UGCCG--CGGGGUGG-UCa-GGU-GGU- -5'
10704 3' -60.1 NC_002794.1 + 187900 0.74 0.36603
Target:  5'- -cGCGCGGUGCcgcucgCCCGCCGGgccCCGCCGc -3'
miRNA:   3'- caUGUGCCGCG------GGGUGGUCa--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 186670 0.77 0.228871
Target:  5'- cGUACACGGCG-CCCGCCAcGUCCAg-- -3'
miRNA:   3'- -CAUGUGCCGCgGGGUGGU-CAGGUggu -5'
10704 3' -60.1 NC_002794.1 + 186346 0.69 0.638213
Target:  5'- -gGCgGCGGCgacguGCCCgACCAG-CCGCCGc -3'
miRNA:   3'- caUG-UGCCG-----CGGGgUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 185767 0.66 0.798501
Target:  5'- -gGCGCGGcCGCCCguCaCAcGUCgGCCGg -3'
miRNA:   3'- caUGUGCC-GCGGGguG-GU-CAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 184523 0.69 0.589113
Target:  5'- -cGCGCGGCGCgggcgacgccgCCCACCg--CCGCCu -3'
miRNA:   3'- caUGUGCCGCG-----------GGGUGGucaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 184186 0.68 0.696894
Target:  5'- --cCGCGGCGCCCgGCgAGgcCCGCUc -3'
miRNA:   3'- cauGUGCCGCGGGgUGgUCa-GGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.