miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 5' -53.8 NC_002794.1 + 66831 0.66 0.981432
Target:  5'- -cCGGCGCGAcuccggGCGccgccgucgGCGCGGCGa -3'
miRNA:   3'- acGCUGUGCUuua---UGCa--------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 113887 0.66 0.981432
Target:  5'- cGCGGCGCGcgu--CG-GCGCGGUc- -3'
miRNA:   3'- aCGCUGUGCuuuauGCaCGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 128806 0.66 0.981432
Target:  5'- cGCGGCAC-----GCGUG-GUGGCGg -3'
miRNA:   3'- aCGCUGUGcuuuaUGCACgCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 48037 0.66 0.981432
Target:  5'- cGCcgGACGCcGAGUGCGUGCugggcaCGGCGc -3'
miRNA:   3'- aCG--CUGUGcUUUAUGCACGc-----GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 110614 0.66 0.981432
Target:  5'- aGCGGaGCGGGAgccGCGgcgcCGCGGCGg -3'
miRNA:   3'- aCGCUgUGCUUUa--UGCac--GCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 12521 0.66 0.981432
Target:  5'- gGCGGCugGGugGAUugGaaggaaCGCGGCGc -3'
miRNA:   3'- aCGCUGugCU--UUAugCac----GCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 37272 0.66 0.979294
Target:  5'- gGCgGGCGC-----GCGgGCGCGGCGUa -3'
miRNA:   3'- aCG-CUGUGcuuuaUGCaCGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 88930 0.66 0.979294
Target:  5'- cGCGGUGCGGcg-AUG-GCGCGGUGUa -3'
miRNA:   3'- aCGCUGUGCUuuaUGCaCGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 61534 0.66 0.979294
Target:  5'- gGCGGCcgccGCGAAGacgACGccGcCGCGGCGg -3'
miRNA:   3'- aCGCUG----UGCUUUa--UGCa-C-GCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 147699 0.66 0.979294
Target:  5'- gGCGAUGCGgcGcACGUGCGCcaguaccGCGg -3'
miRNA:   3'- aCGCUGUGCuuUaUGCACGCGc------CGCa -5'
10704 5' -53.8 NC_002794.1 + 90814 0.66 0.97907
Target:  5'- gGUGGCguGCGGAcgcccaucagucgGUACGaGgGCGGCGUg -3'
miRNA:   3'- aCGCUG--UGCUU-------------UAUGCaCgCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 142891 0.66 0.976978
Target:  5'- aGCGGCAg-----GCGUGCcCGGCGUc -3'
miRNA:   3'- aCGCUGUgcuuuaUGCACGcGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 89712 0.66 0.976978
Target:  5'- gGCGcCGCGGugccgAUccGCGCGGCGUc -3'
miRNA:   3'- aCGCuGUGCUuua--UGcaCGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 94504 0.66 0.976978
Target:  5'- cGUGGCGgGGAugaAUACGUugcagagacuguGCGUGGUGUg -3'
miRNA:   3'- aCGCUGUgCUU---UAUGCA------------CGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 102681 0.66 0.976978
Target:  5'- gGCGAC-CGGGugucGUACGUGCuGaCGGCc- -3'
miRNA:   3'- aCGCUGuGCUU----UAUGCACG-C-GCCGca -5'
10704 5' -53.8 NC_002794.1 + 141409 0.66 0.976978
Target:  5'- gGCGACgACGAugaccuCGgGgGCGGCGg -3'
miRNA:   3'- aCGCUG-UGCUuuau--GCaCgCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 134265 0.66 0.976978
Target:  5'- -uCGACGCG---UGCG-GCGUGGUGUa -3'
miRNA:   3'- acGCUGUGCuuuAUGCaCGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 179684 0.66 0.976978
Target:  5'- gGCGGCgACGGug-GCGgcgGCGaCGGUGg -3'
miRNA:   3'- aCGCUG-UGCUuuaUGCa--CGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 182463 0.66 0.976978
Target:  5'- cGCGGCG--------GUGCGCGGCGUc -3'
miRNA:   3'- aCGCUGUgcuuuaugCACGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 112348 0.66 0.974477
Target:  5'- gGCGGCGCcg---GCG-GCGgGGCGg -3'
miRNA:   3'- aCGCUGUGcuuuaUGCaCGCgCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.