miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 3' -59.5 NC_002794.1 + 81962 0.66 0.823246
Target:  5'- -cGCGG-C-GCCCG-C-CCGCUUCCc -3'
miRNA:   3'- caCGCCuGuCGGGCuGaGGCGAAGGu -5'
10705 3' -59.5 NC_002794.1 + 191366 0.66 0.823246
Target:  5'- -cGgGGACGGgCCGGaccCUCCGCgcCCGc -3'
miRNA:   3'- caCgCCUGUCgGGCU---GAGGCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 112211 0.66 0.823246
Target:  5'- -cGUGGAgcaCGGCCCG-CUCCaggGCgUCCAg -3'
miRNA:   3'- caCGCCU---GUCGGGCuGAGG---CGaAGGU- -5'
10705 3' -59.5 NC_002794.1 + 59312 0.66 0.823246
Target:  5'- -aGCGccacGGCGcGCCCGACUUCGCcgCCc -3'
miRNA:   3'- caCGC----CUGU-CGGGCUGAGGCGaaGGu -5'
10705 3' -59.5 NC_002794.1 + 137341 0.66 0.814939
Target:  5'- -cGCGGACGGCUCGGCgucgUCGggguCUUCUu -3'
miRNA:   3'- caCGCCUGUCGGGCUGa---GGC----GAAGGu -5'
10705 3' -59.5 NC_002794.1 + 153349 0.66 0.814939
Target:  5'- cGUGUugucaGGACgcGGCCCGGCUgCGCgcCCu -3'
miRNA:   3'- -CACG-----CCUG--UCGGGCUGAgGCGaaGGu -5'
10705 3' -59.5 NC_002794.1 + 119772 0.66 0.814939
Target:  5'- -cGCGGcCGGCCuccaggCGGCUCCGg-UCCGc -3'
miRNA:   3'- caCGCCuGUCGG------GCUGAGGCgaAGGU- -5'
10705 3' -59.5 NC_002794.1 + 12006 0.66 0.812417
Target:  5'- uGUGUGGACugaugugcgccgccGGCCCgGGCgUCCGCgccuUCCc -3'
miRNA:   3'- -CACGCCUG--------------UCGGG-CUG-AGGCGa---AGGu -5'
10705 3' -59.5 NC_002794.1 + 85422 0.66 0.806478
Target:  5'- --aCGGACAcGCCCGAC-CCaagaGCUUCUg -3'
miRNA:   3'- cacGCCUGU-CGGGCUGaGG----CGAAGGu -5'
10705 3' -59.5 NC_002794.1 + 62503 0.66 0.806478
Target:  5'- -gGCGGGCGGCgCCGccggcgcCUCCGCccaCCGu -3'
miRNA:   3'- caCGCCUGUCG-GGCu------GAGGCGaa-GGU- -5'
10705 3' -59.5 NC_002794.1 + 42430 0.66 0.797869
Target:  5'- cGUGCGGuugaACucgucGCCCu-CUCCGCgUUCCAu -3'
miRNA:   3'- -CACGCC----UGu----CGGGcuGAGGCG-AAGGU- -5'
10705 3' -59.5 NC_002794.1 + 44509 0.66 0.797001
Target:  5'- -gGCGGcCcagaccgGGCCCGugUCCGCgagcgcgCCGu -3'
miRNA:   3'- caCGCCuG-------UCGGGCugAGGCGaa-----GGU- -5'
10705 3' -59.5 NC_002794.1 + 12728 0.66 0.789121
Target:  5'- -cGCGGcgacgAgGGCCCGG-UCCGCUaCCAg -3'
miRNA:   3'- caCGCC-----UgUCGGGCUgAGGCGAaGGU- -5'
10705 3' -59.5 NC_002794.1 + 186876 0.66 0.789121
Target:  5'- -aGCGGGCucggcucgcGGUCCGGCgUCCGCaggaccaggUUCCGg -3'
miRNA:   3'- caCGCCUG---------UCGGGCUG-AGGCG---------AAGGU- -5'
10705 3' -59.5 NC_002794.1 + 70339 0.66 0.789121
Target:  5'- -cGCcGACGGCCgGGCgcCCGCUcgUCCGc -3'
miRNA:   3'- caCGcCUGUCGGgCUGa-GGCGA--AGGU- -5'
10705 3' -59.5 NC_002794.1 + 24206 0.66 0.789121
Target:  5'- -aGCGcGGCGGCCCG-CUcacCCGUgUCCGu -3'
miRNA:   3'- caCGC-CUGUCGGGCuGA---GGCGaAGGU- -5'
10705 3' -59.5 NC_002794.1 + 186349 0.66 0.789121
Target:  5'- -gGCGGcgACGuGCCCGACcagCCGCcgCCGc -3'
miRNA:   3'- caCGCC--UGU-CGGGCUGa--GGCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 58133 0.67 0.780242
Target:  5'- --cUGGGCGGCCUGGC-CCGCcgCCu -3'
miRNA:   3'- cacGCCUGUCGGGCUGaGGCGaaGGu -5'
10705 3' -59.5 NC_002794.1 + 187684 0.67 0.780242
Target:  5'- aUGCGGgucgaGCGGCCCGuuggCCGUcUCCGu -3'
miRNA:   3'- cACGCC-----UGUCGGGCuga-GGCGaAGGU- -5'
10705 3' -59.5 NC_002794.1 + 100818 0.67 0.771238
Target:  5'- cGUGcCGGGCGGCgggggCCGGCagCCggGCUUCCGc -3'
miRNA:   3'- -CAC-GCCUGUCG-----GGCUGa-GG--CGAAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.