miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 193821 0.68 0.838246
Target:  5'- uGGCGCCGAcgcgUCgCGGCGc--CGGCACUu -3'
miRNA:   3'- uUUGCGGCU----AG-GCCGUcaaGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 191659 0.66 0.909188
Target:  5'- --cCGCCGGgggacggcgCCGGCAGcggCGGCGg- -3'
miRNA:   3'- uuuGCGGCUa--------GGCCGUCaa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 189737 1.05 0.005762
Target:  5'- gAAACGCCGAUCCGGCAGUUCGGCACUc -3'
miRNA:   3'- -UUUGCGGCUAGGCCGUCAAGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 185171 0.66 0.915069
Target:  5'- --cCGCCGG-CgCGGCGcggUCGGCGCg -3'
miRNA:   3'- uuuGCGGCUaG-GCCGUca-AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 181536 0.71 0.650214
Target:  5'- --cCGCCG--CCGGCGGgcCGGCGCUc -3'
miRNA:   3'- uuuGCGGCuaGGCCGUCaaGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 181227 0.66 0.915069
Target:  5'- cGACGa-GAUCCGGCGa--CGGCGCg -3'
miRNA:   3'- uUUGCggCUAGGCCGUcaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 181067 0.74 0.510559
Target:  5'- aGAACGCgGGUCCgGGCAGg--GGCACg -3'
miRNA:   3'- -UUUGCGgCUAGG-CCGUCaagCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 180741 0.71 0.66032
Target:  5'- cGACGCCG-UCCGGCuccUCGGCGg- -3'
miRNA:   3'- uUUGCGGCuAGGCCGucaAGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 161075 0.69 0.786545
Target:  5'- ---aGUCGGUCCGGUugauGUUCguGGCGCUa -3'
miRNA:   3'- uuugCGGCUAGGCCGu---CAAG--CCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 151838 0.7 0.729967
Target:  5'- cGACGCCG-UUCGGCGaggcGUucaUCGGCGCg -3'
miRNA:   3'- uUUGCGGCuAGGCCGU----CA---AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 150537 0.69 0.786545
Target:  5'- ---aGCCGggCCGGCGccauggccGUcUCGGCGCUg -3'
miRNA:   3'- uuugCGGCuaGGCCGU--------CA-AGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 147681 0.69 0.75875
Target:  5'- -cGCGCuCGAggacCCGGCGGcgaugCGGCGCa -3'
miRNA:   3'- uuUGCG-GCUa---GGCCGUCaa---GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 145810 0.67 0.861724
Target:  5'- cGACGCCGccgCCGGCGGcgagcCGaGCGCg -3'
miRNA:   3'- uUUGCGGCua-GGCCGUCaa---GC-CGUGa -5'
10706 3' -56.5 NC_002794.1 + 142156 0.7 0.749253
Target:  5'- gAGGCGgCGGUagcaCCGGCAGcgUCGGCAg- -3'
miRNA:   3'- -UUUGCgGCUA----GGCCGUCa-AGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 141437 0.69 0.768136
Target:  5'- gGGGCGCCGGgggcgCCGGgAG--CGGCGCg -3'
miRNA:   3'- -UUUGCGGCUa----GGCCgUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 139449 0.72 0.589553
Target:  5'- -cGCGCCGAU-CGGCAGgucgUCGuGCGCc -3'
miRNA:   3'- uuUGCGGCUAgGCCGUCa---AGC-CGUGa -5'
10706 3' -56.5 NC_002794.1 + 138133 0.66 0.915069
Target:  5'- --uCGCCGGUCucgggCGGCGGUUucuugcgcagcCGGCAUUu -3'
miRNA:   3'- uuuGCGGCUAG-----GCCGUCAA-----------GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 137648 0.67 0.861724
Target:  5'- cGGGCGCCGGgccUCCGGCgccgcuGGUgCGGaCGCa -3'
miRNA:   3'- -UUUGCGGCU---AGGCCG------UCAaGCC-GUGa -5'
10706 3' -56.5 NC_002794.1 + 137601 0.67 0.869153
Target:  5'- ---aGCCGccgCCGGCGGUcgCGGCGg- -3'
miRNA:   3'- uuugCGGCua-GGCCGUCAa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 137389 0.67 0.876373
Target:  5'- cGACGCgGGUCCGGUcuGUcCGGCGu- -3'
miRNA:   3'- uUUGCGgCUAGGCCGu-CAaGCCGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.