miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 195211 0.65 0.766751
Target:  5'- aGCcCCGCCAGCUGCGGcagcagcccgcGCGGc-- -3'
miRNA:   3'- -CGuGGCGGUCGGCGCCcua--------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 194540 0.71 0.473639
Target:  5'- aGCGCCGCCAGCaCGCccgc-GCGGAAc -3'
miRNA:   3'- -CGUGGCGGUCG-GCGcccuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 193056 0.71 0.429581
Target:  5'- aGCGCCcgcaCCGGCUGCGGGccgucGCGGGAc -3'
miRNA:   3'- -CGUGGc---GGUCGGCGCCCua---CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 192142 0.66 0.761279
Target:  5'- uGCuGCUGCCGG-CGCGGucGcgGCGGAGc -3'
miRNA:   3'- -CG-UGGCGGUCgGCGCC--CuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 191871 0.66 0.742774
Target:  5'- -gGCCGgCGGCggaGgGGGcgGCGGAGg -3'
miRNA:   3'- cgUGGCgGUCGg--CgCCCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 190735 0.67 0.685372
Target:  5'- cGCAgCGCCcGCCGCcgucucgacggGGGcgGCGGc-- -3'
miRNA:   3'- -CGUgGCGGuCGGCG-----------CCCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 189773 1.07 0.001731
Target:  5'- uGCACCGCCAGCCGCGGGAUGCGGAAAu -3'
miRNA:   3'- -CGUGGCGGUCGGCGCCCUACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 189463 0.67 0.685372
Target:  5'- aGCACgCGCCgaaaGGCCGCGGGcgucGUGUGc--- -3'
miRNA:   3'- -CGUG-GCGG----UCGGCGCCC----UACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 189039 0.73 0.334471
Target:  5'- -gACCGCCAGCgGCGGGcUGCGc--- -3'
miRNA:   3'- cgUGGCGGUCGgCGCCCuACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 185269 0.71 0.438202
Target:  5'- aCGCCGCCGGCCGaguGGGccGcCGGAc- -3'
miRNA:   3'- cGUGGCGGUCGGCg--CCCuaC-GCCUuu -5'
10706 5' -60.8 NC_002794.1 + 184571 0.69 0.558052
Target:  5'- cGCGCCGCCgcggcggcggcGGCCacGCGcGGccGCGGGAu -3'
miRNA:   3'- -CGUGGCGG-----------UCGG--CGC-CCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 184452 0.7 0.510458
Target:  5'- cGCGCCGCUgccGcCCGCGGGccGCGcGAAc -3'
miRNA:   3'- -CGUGGCGGu--C-GGCGCCCuaCGC-CUUu -5'
10706 5' -60.8 NC_002794.1 + 184043 0.73 0.364397
Target:  5'- cGCAgCGCgCGGUCGCGGGccGCGGcGAa -3'
miRNA:   3'- -CGUgGCG-GUCGGCGCCCuaCGCCuUU- -5'
10706 5' -60.8 NC_002794.1 + 182551 0.66 0.714365
Target:  5'- uGCGCCG-CGGCCGgcaccgucacCGGGAucuccgUGCGGGc- -3'
miRNA:   3'- -CGUGGCgGUCGGC----------GCCCU------ACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 182087 0.7 0.519852
Target:  5'- cCACCGCCAGCCagcguucuucGCGGua-GCGGAu- -3'
miRNA:   3'- cGUGGCGGUCGG----------CGCCcuaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 181159 0.66 0.752076
Target:  5'- aGCccguCCGCCGcGCCGaCGGcGAacgGCGGAc- -3'
miRNA:   3'- -CGu---GGCGGU-CGGC-GCC-CUa--CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 180927 0.66 0.718192
Target:  5'- gGCGCCGUCGGaggucggucucgcguCCGCGGccGAcGCGGAc- -3'
miRNA:   3'- -CGUGGCGGUC---------------GGCGCC--CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 179479 0.68 0.61665
Target:  5'- cGCACUcgaccgguuGUCGGCCGUccGGGAUGCuGAAGu -3'
miRNA:   3'- -CGUGG---------CGGUCGGCG--CCCUACGcCUUU- -5'
10706 5' -60.8 NC_002794.1 + 156407 0.69 0.558052
Target:  5'- gGCGCCG-CGGCCGCGGccacggccgGCGGGu- -3'
miRNA:   3'- -CGUGGCgGUCGGCGCCcua------CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 154363 0.68 0.61665
Target:  5'- cGCGCgGuCCAgGCCGCGGcGGcgGCGGGc- -3'
miRNA:   3'- -CGUGgC-GGU-CGGCGCC-CUa-CGCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.