miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 110003 0.71 0.970869
Target:  5'- ----aCGcAGACGGCGaaaaCUGUCUCGGa -3'
miRNA:   3'- cuuuaGUuUCUGCUGCg---GGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 128275 0.7 0.978668
Target:  5'- cGAGcgCGGAGcCGACGgCCGUCUuCGa -3'
miRNA:   3'- -CUUuaGUUUCuGCUGCgGGCAGA-GCc -5'
10707 3' -49.9 NC_002794.1 + 43700 0.7 0.980887
Target:  5'- gGAGAUCcAGGugGugAUGaCCGUCUCGGc -3'
miRNA:   3'- -CUUUAGuUUCugC--UGCgGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 121907 0.7 0.980887
Target:  5'- --cGUCGAcuGGACGuCGCCCGcCgCGGg -3'
miRNA:   3'- cuuUAGUU--UCUGCuGCGGGCaGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 50770 0.7 0.980887
Target:  5'- ----gCGgcGGCGACGgCgCGUCUCGGg -3'
miRNA:   3'- cuuuaGUuuCUGCUGCgG-GCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 126836 0.7 0.980887
Target:  5'- cGggGUCGGAGaaccgcGCGACGUCUGUCUa-- -3'
miRNA:   3'- -CuuUAGUUUC------UGCUGCGGGCAGAgcc -5'
10707 3' -49.9 NC_002794.1 + 67882 0.7 0.982929
Target:  5'- cGAAGcUCcGAG-CGGacucccccuCGCCCGUCUCGGc -3'
miRNA:   3'- -CUUU-AGuUUCuGCU---------GCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 179929 0.7 0.984802
Target:  5'- cGGuuUCGAAGACGACGUCgCGggC-CGGg -3'
miRNA:   3'- -CUuuAGUUUCUGCUGCGG-GCa-GaGCC- -5'
10707 3' -49.9 NC_002794.1 + 157319 0.7 0.986514
Target:  5'- ---cUCGAAGACGAagaCGCgCGUC-CGGu -3'
miRNA:   3'- cuuuAGUUUCUGCU---GCGgGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 112665 0.69 0.989491
Target:  5'- ---cUCGcAGGCGGCGUUCGUCUCc- -3'
miRNA:   3'- cuuuAGUuUCUGCUGCGGGCAGAGcc -5'
10707 3' -49.9 NC_002794.1 + 10831 0.69 0.989491
Target:  5'- ---cUCcGAGACGGCGCCCuG-CUCGu -3'
miRNA:   3'- cuuuAGuUUCUGCUGCGGG-CaGAGCc -5'
10707 3' -49.9 NC_002794.1 + 133914 0.69 0.990772
Target:  5'- -cGGUCuacGAGACGgcggccGCGCCCGUCcaguugCGGg -3'
miRNA:   3'- cuUUAGu--UUCUGC------UGCGGGCAGa-----GCC- -5'
10707 3' -49.9 NC_002794.1 + 123177 0.69 0.990772
Target:  5'- ----aCGAGGAgaacgugccCGACgGCCgCGUCUCGGa -3'
miRNA:   3'- cuuuaGUUUCU---------GCUG-CGG-GCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 176212 0.69 0.990772
Target:  5'- cGGAUgGAAGGCu-CGCUCGUCUCGc -3'
miRNA:   3'- cUUUAgUUUCUGcuGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 44555 0.69 0.991928
Target:  5'- ----cCGgcGGCGGCGCCCGUUgacgucacgCGGg -3'
miRNA:   3'- cuuuaGUuuCUGCUGCGGGCAGa--------GCC- -5'
10707 3' -49.9 NC_002794.1 + 44200 0.69 0.991928
Target:  5'- cGAAG-CcGGGcCGACGUCCGgCUCGGg -3'
miRNA:   3'- -CUUUaGuUUCuGCUGCGGGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 190728 0.69 0.992965
Target:  5'- ----cCGGAGACGcaGCGCCCGccgccgUCUCGa -3'
miRNA:   3'- cuuuaGUUUCUGC--UGCGGGC------AGAGCc -5'
10707 3' -49.9 NC_002794.1 + 138116 0.69 0.992965
Target:  5'- -----gGAGGGCGuggugcucguCGCCgGUCUCGGg -3'
miRNA:   3'- cuuuagUUUCUGCu---------GCGGgCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 175749 0.68 0.993894
Target:  5'- cGAGUCu--GugGACGCuagugaCCGUUUCGGc -3'
miRNA:   3'- cUUUAGuuuCugCUGCG------GGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 180728 0.68 0.993894
Target:  5'- aGAGAcgCGcGGACGACGCC-GUC-CGGc -3'
miRNA:   3'- -CUUUa-GUuUCUGCUGCGGgCAGaGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.