miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 191360 0.67 0.997127
Target:  5'- aGGAGUCGGGGACGggccggacccuccGCGCCCG---CGGc -3'
miRNA:   3'- -CUUUAGUUUCUGC-------------UGCGGGCagaGCC- -5'
10707 3' -49.9 NC_002794.1 + 190728 0.69 0.992965
Target:  5'- ----cCGGAGACGcaGCGCCCGccgccgUCUCGa -3'
miRNA:   3'- cuuuaGUUUCUGC--UGCGGGC------AGAGCc -5'
10707 3' -49.9 NC_002794.1 + 188004 1.11 0.012966
Target:  5'- cGAAAUCAAAGACGACGCCCGUCUCGGc -3'
miRNA:   3'- -CUUUAGUUUCUGCUGCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 181044 0.78 0.752557
Target:  5'- ---cUCcGAGACGAaGCUCGUCUCGGa -3'
miRNA:   3'- cuuuAGuUUCUGCUgCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 180866 0.79 0.692579
Target:  5'- --cGUCGGAGGCGgcggauccggcGCGCCCGgUCUCGGc -3'
miRNA:   3'- cuuUAGUUUCUGC-----------UGCGGGC-AGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 180728 0.68 0.993894
Target:  5'- aGAGAcgCGcGGACGACGCC-GUC-CGGc -3'
miRNA:   3'- -CUUUa-GUuUCUGCUGCGGgCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 179929 0.7 0.984802
Target:  5'- cGGuuUCGAAGACGACGUCgCGggC-CGGg -3'
miRNA:   3'- -CUuuAGUUUCUGCUGCGG-GCa-GaGCC- -5'
10707 3' -49.9 NC_002794.1 + 179434 0.72 0.953657
Target:  5'- cGGGcgCGGAGGCGugGaccaCCGcCUCGGu -3'
miRNA:   3'- -CUUuaGUUUCUGCugCg---GGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 178552 0.66 0.99948
Target:  5'- -cGAUCGGGcaccACGucuucACGCCgGUCUCGGa -3'
miRNA:   3'- cuUUAGUUUc---UGC-----UGCGGgCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 176212 0.69 0.990772
Target:  5'- cGGAUgGAAGGCu-CGCUCGUCUCGc -3'
miRNA:   3'- cUUUAgUUUCUGcuGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 175749 0.68 0.993894
Target:  5'- cGAGUCu--GugGACGCuagugaCCGUUUCGGc -3'
miRNA:   3'- cUUUAGuuuCugCUGCG------GGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 160295 0.68 0.994721
Target:  5'- -uGGUCGcugcucuGGugGAUGUUCGUCUUGGg -3'
miRNA:   3'- cuUUAGUu------UCugCUGCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 157319 0.7 0.986514
Target:  5'- ---cUCGAAGACGAagaCGCgCGUC-CGGu -3'
miRNA:   3'- cuuuAGUUUCUGCU---GCGgGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 157044 0.67 0.998596
Target:  5'- ---uUCAGAGucCGGCGagaCCGUCgCGGa -3'
miRNA:   3'- cuuuAGUUUCu-GCUGCg--GGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 149848 0.75 0.858833
Target:  5'- cGAGGaCGGGGACGAggagcggcCGCCCG-CUCGGg -3'
miRNA:   3'- -CUUUaGUUUCUGCU--------GCGGGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 147002 0.68 0.996104
Target:  5'- cGAcGUCGgcGGCGGCGgCCGccggcgCUCGGu -3'
miRNA:   3'- -CUuUAGUuuCUGCUGCgGGCa-----GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 145637 0.67 0.997174
Target:  5'- gGAGAUCGGAccCGA-GCUCGUCgUCGGg -3'
miRNA:   3'- -CUUUAGUUUcuGCUgCGGGCAG-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 141937 0.66 0.99904
Target:  5'- cGGAUCcGAcGGCGGCGaCCCGUUggaCGGc -3'
miRNA:   3'- cUUUAGuUU-CUGCUGC-GGGCAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 141899 0.67 0.99761
Target:  5'- --cGUCc-AGGCGACGCgCCGuUCUCGcGg -3'
miRNA:   3'- cuuUAGuuUCUGCUGCG-GGC-AGAGC-C- -5'
10707 3' -49.9 NC_002794.1 + 141372 0.67 0.997989
Target:  5'- cGGAGagAAcGGCGAcCGUCCGUCguUCGGg -3'
miRNA:   3'- -CUUUagUUuCUGCU-GCGGGCAG--AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.