miRNA display CGI


Results 21 - 40 of 185 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 11319 0.72 0.47023
Target:  5'- gGCCAGCGCgagCCCGaacgagacgcagGCgAUCUCCGGCGu -3'
miRNA:   3'- -UGGUCGUG---GGGC------------UGgUAGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 96700 0.72 0.487404
Target:  5'- cGCCGGCAgcgccuucuccucCCCCGGCCGag-CCGGCGa -3'
miRNA:   3'- -UGGUCGU-------------GGGGCUGGUagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 114868 0.72 0.488316
Target:  5'- uCCAGCGCCUCGAgCAgCUgCAGCGu -3'
miRNA:   3'- uGGUCGUGGGGCUgGUaGAgGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 39708 0.72 0.497481
Target:  5'- cGCCGGCGCUaCCGACCG-CUgCAGCa- -3'
miRNA:   3'- -UGGUCGUGG-GGCUGGUaGAgGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 35316 0.72 0.497481
Target:  5'- cGCCAGUucACCCUGugCGUgCUCCuguucGCGGu -3'
miRNA:   3'- -UGGUCG--UGGGGCugGUA-GAGGu----CGCC- -5'
10708 3' -59.6 NC_002794.1 + 138730 0.72 0.506722
Target:  5'- aGCCGGCucgacgggguCCCCGGCC--CUCCGGgGGc -3'
miRNA:   3'- -UGGUCGu---------GGGGCUGGuaGAGGUCgCC- -5'
10708 3' -59.6 NC_002794.1 + 116868 0.71 0.515101
Target:  5'- gGCCGugucGCGCUcgucaggggggcgCCGgcGCCGUCUCCGGCGGc -3'
miRNA:   3'- -UGGU----CGUGG-------------GGC--UGGUAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 184111 0.71 0.516036
Target:  5'- cGCCAGCGCCCCG-CUcg--CCGGCGu -3'
miRNA:   3'- -UGGUCGUGGGGCuGGuagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 110625 0.71 0.516036
Target:  5'- aGCCgcGGCGCCgCGGCgGcggggucggguuUCUCCGGCGGc -3'
miRNA:   3'- -UGG--UCGUGGgGCUGgU------------AGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 61803 0.71 0.525418
Target:  5'- uCCcGU-CCCCGcUCAUCUCCGGCGGc -3'
miRNA:   3'- uGGuCGuGGGGCuGGUAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 121407 0.71 0.525418
Target:  5'- cGCCGGgACCgCGACCGUCgCCGggaccGCGGc -3'
miRNA:   3'- -UGGUCgUGGgGCUGGUAGaGGU-----CGCC- -5'
10708 3' -59.6 NC_002794.1 + 96186 0.71 0.525418
Target:  5'- cACCGGCGCCugCCGGCCgaGUCccugCCGGCGc -3'
miRNA:   3'- -UGGUCGUGG--GGCUGG--UAGa---GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 75349 0.71 0.534863
Target:  5'- gACCGGCgacgguucGCCaCCGACCcgCcgcggCCGGCGGc -3'
miRNA:   3'- -UGGUCG--------UGG-GGCUGGuaGa----GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 111104 0.71 0.534863
Target:  5'- cCCGGCgggACCgUGGCCGUCgacggcgCCGGCGGc -3'
miRNA:   3'- uGGUCG---UGGgGCUGGUAGa------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 18678 0.71 0.534863
Target:  5'- cUCGGCugCCgCcGCCGUCUCCGGCa- -3'
miRNA:   3'- uGGUCGugGG-GcUGGUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 44443 0.71 0.544369
Target:  5'- cACCGGCGCgCCCGcCCGgacgUCGGCGGc -3'
miRNA:   3'- -UGGUCGUG-GGGCuGGUaga-GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 146987 0.71 0.544369
Target:  5'- gUCGGCGCCgCCGGCCGaCgUCGGCGGc -3'
miRNA:   3'- uGGUCGUGG-GGCUGGUaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 35772 0.71 0.553928
Target:  5'- -gCGGCACCgucgCCGGCguCGUCUCCGGCGu -3'
miRNA:   3'- ugGUCGUGG----GGCUG--GUAGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 103758 0.71 0.563536
Target:  5'- cCgGGUACUCCucgaagauggcGugCAUCUCCGGCGGc -3'
miRNA:   3'- uGgUCGUGGGG-----------CugGUAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 190733 0.71 0.563536
Target:  5'- gACgCAGCGCCCgCcGCCGUCUCgacgggggCGGCGGc -3'
miRNA:   3'- -UG-GUCGUGGG-GcUGGUAGAG--------GUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.