miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 195246 0.73 0.418148
Target:  5'- cACCAGCA--CCGACCAcC-CCGGCGGg -3'
miRNA:   3'- -UGGUCGUggGGCUGGUaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 194833 0.67 0.747085
Target:  5'- cGCUcGCGgCCCGG-CGUCUCCAGCc- -3'
miRNA:   3'- -UGGuCGUgGGGCUgGUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 194447 0.67 0.756292
Target:  5'- cCCGGcCGCUCCuuaaACCAguagccgcgCUCCAGCGGc -3'
miRNA:   3'- uGGUC-GUGGGGc---UGGUa--------GAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 194311 0.67 0.774395
Target:  5'- cGCCAGCGCCugCCGcagcggaucgcGCCAcgggcUCUCCGaCGGg -3'
miRNA:   3'- -UGGUCGUGG--GGC-----------UGGU-----AGAGGUcGCC- -5'
10708 3' -59.6 NC_002794.1 + 193803 0.68 0.72746
Target:  5'- cGCCGGCGCCcgcucgucuggcgCCGACgCGUCgcggcgCCGGCa- -3'
miRNA:   3'- -UGGUCGUGG-------------GGCUG-GUAGa-----GGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 193319 0.67 0.756292
Target:  5'- cACgCAGCG-CCCGAUCggUUCCAGgCGGu -3'
miRNA:   3'- -UG-GUCGUgGGGCUGGuaGAGGUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 192592 0.68 0.699829
Target:  5'- uCCAgGUACgCCGACCAcuucUCUCCGccagguGCGGa -3'
miRNA:   3'- uGGU-CGUGgGGCUGGU----AGAGGU------CGCC- -5'
10708 3' -59.6 NC_002794.1 + 190815 0.68 0.722736
Target:  5'- cGCCAGCuCgUCGaaguugaagGCCAccagauacagcacgaUCUCCAGCGGg -3'
miRNA:   3'- -UGGUCGuGgGGC---------UGGU---------------AGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 190733 0.71 0.563536
Target:  5'- gACgCAGCGCCCgCcGCCGUCUCgacgggggCGGCGGc -3'
miRNA:   3'- -UG-GUCGUGGG-GcUGGUAGAG--------GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 190520 0.68 0.709417
Target:  5'- cCCAGcCGCgugCCGAUCGUCguccaCCAGCGGu -3'
miRNA:   3'- uGGUC-GUGg--GGCUGGUAGa----GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 190104 0.66 0.817484
Target:  5'- cCCA-CGCCCCG-CCGUCcgcgCCgaAGCGGu -3'
miRNA:   3'- uGGUcGUGGGGCuGGUAGa---GG--UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 189495 0.69 0.661038
Target:  5'- cACCcagcugGGCACCUCGuguCCGUCgcggaUCAGCGGg -3'
miRNA:   3'- -UGG------UCGUGGGGCu--GGUAGa----GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 189399 0.67 0.783277
Target:  5'- gGCCAcGUAgUCCG-CCAgggCCAGCGGg -3'
miRNA:   3'- -UGGU-CGUgGGGCuGGUagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 189144 0.69 0.651268
Target:  5'- cGCCAGCGCCa-GAC--UCUCCcGCGGc -3'
miRNA:   3'- -UGGUCGUGGggCUGguAGAGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 188904 0.66 0.825669
Target:  5'- gGCCAGCucggucAgCCCGuACag-CUUCAGCGGa -3'
miRNA:   3'- -UGGUCG------UgGGGC-UGguaGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 188340 0.69 0.680507
Target:  5'- cGCCGGCGgCgCCGucgcgcCCGUCcggCCGGCGGc -3'
miRNA:   3'- -UGGUCGUgG-GGCu-----GGUAGa--GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 188026 0.69 0.651268
Target:  5'- cUCGGCGCCCUcGCCGUC-CCGgacGCGGc -3'
miRNA:   3'- uGGUCGUGGGGcUGGUAGaGGU---CGCC- -5'
10708 3' -59.6 NC_002794.1 + 187691 0.66 0.825669
Target:  5'- uCgAGCGgCCCGuugGCCGUCUCCGucaCGGg -3'
miRNA:   3'- uGgUCGUgGGGC---UGGUAGAGGUc--GCC- -5'
10708 3' -59.6 NC_002794.1 + 187202 1.09 0.001969
Target:  5'- gACCAGCACCCCGACCAUCUCCAGCGGc -3'
miRNA:   3'- -UGGUCGUGGGGCUGGUAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 186989 0.67 0.761768
Target:  5'- cACCAGCuCCgCCGGCUgcGUCgucagguacggcgUCAGCGGg -3'
miRNA:   3'- -UGGUCGuGG-GGCUGG--UAGa------------GGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.