miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 98933 0.72 0.646877
Target:  5'- uGGgCGCGGC-CGGGaAGgGGCUGggGc -3'
miRNA:   3'- -CCgGCGUCGuGUCUaUCgCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 110625 0.72 0.650944
Target:  5'- aGCCGCGGCGCcgcggcggcggggucGGGUuucuccGGCGGCUGcAGa -3'
miRNA:   3'- cCGGCGUCGUG---------------UCUA------UCGCCGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 123329 0.72 0.657039
Target:  5'- gGGCCGCAGCugGG--GGUGGCg---- -3'
miRNA:   3'- -CCGGCGUCGugUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 80407 0.72 0.667182
Target:  5'- cGCCGCGGCcCAGGUGGCgccgGGC-GggGc -3'
miRNA:   3'- cCGGCGUCGuGUCUAUCG----CCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 186208 0.72 0.667182
Target:  5'- gGGCCcCAGgGCAGAUGGCGGUccGGGu -3'
miRNA:   3'- -CCGGcGUCgUGUCUAUCGCCGacUUC- -5'
10708 5' -55.6 NC_002794.1 + 47791 0.72 0.687374
Target:  5'- cGGCCGCAGUACAcGGUcucggcgaacaGGCGGaC-GAGGg -3'
miRNA:   3'- -CCGGCGUCGUGU-CUA-----------UCGCC-GaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 142367 0.71 0.697407
Target:  5'- aGGCgGCGGagGCGGAgggAGCGGC-GGAGa -3'
miRNA:   3'- -CCGgCGUCg-UGUCUa--UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 61163 0.71 0.707385
Target:  5'- aGCgCGCGGUcCGGAUcGGCGGCUGGu- -3'
miRNA:   3'- cCG-GCGUCGuGUCUA-UCGCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 113883 0.71 0.707385
Target:  5'- cGGCCGCGGCGCGcGUcggcGCGGuCUGcAGGa -3'
miRNA:   3'- -CCGGCGUCGUGUcUAu---CGCC-GAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 112356 0.71 0.707385
Target:  5'- cGGCgGCGGgGCGGggAGCuGCUGGAa -3'
miRNA:   3'- -CCGgCGUCgUGUCuaUCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 56325 0.71 0.7173
Target:  5'- cGGCCGUGGC-CGGcgAcGCGGC-GAAGa -3'
miRNA:   3'- -CCGGCGUCGuGUCuaU-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 190030 0.71 0.727144
Target:  5'- cGGCCgGUAGCGCAcGUAGC-GCUGAc- -3'
miRNA:   3'- -CCGG-CGUCGUGUcUAUCGcCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 118226 0.71 0.727144
Target:  5'- cGGCCacGCAGCucuggaGGAUgucGGCGgGCUGGAGg -3'
miRNA:   3'- -CCGG--CGUCGug----UCUA---UCGC-CGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 129931 0.71 0.727144
Target:  5'- aGGCCGUGGCgACGGcggcGGCGGCggcucUGGAGa -3'
miRNA:   3'- -CCGGCGUCG-UGUCua--UCGCCG-----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 95783 0.71 0.727144
Target:  5'- cGGCCGgGGCG-AGAggcGCGGCgGAGGa -3'
miRNA:   3'- -CCGGCgUCGUgUCUau-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 55270 0.71 0.736907
Target:  5'- aGCCGgGGgGCGGcgGUGGCGGCgacGAGGg -3'
miRNA:   3'- cCGGCgUCgUGUC--UAUCGCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 112456 0.71 0.736907
Target:  5'- cGG-CGCAGCGuCcGGUAGCGGCucUGGAGc -3'
miRNA:   3'- -CCgGCGUCGU-GuCUAUCGCCG--ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 192018 0.71 0.745616
Target:  5'- uGGCCGCGGCugcuguuucugugGCGGc-GGCGGCUGc-- -3'
miRNA:   3'- -CCGGCGUCG-------------UGUCuaUCGCCGACuuc -5'
10708 5' -55.6 NC_002794.1 + 188251 0.71 0.746579
Target:  5'- cGGCgGCGGCGgcGGUAGCGGCgGGc- -3'
miRNA:   3'- -CCGgCGUCGUguCUAUCGCCGaCUuc -5'
10708 5' -55.6 NC_002794.1 + 104519 0.71 0.746579
Target:  5'- gGGCUGaGGCGCGGGUGGC-GCggGAAGa -3'
miRNA:   3'- -CCGGCgUCGUGUCUAUCGcCGa-CUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.