miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 194112 0.67 0.899385
Target:  5'- uGCUGCGGCACcgcgcgcaCGGCUGAGGc -3'
miRNA:   3'- cCGGCGUCGUGucuauc--GCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 192156 0.68 0.860104
Target:  5'- cGGUCGCGGCGgagccugcggUAGGUccggcgaaGGCGGCcGAAGc -3'
miRNA:   3'- -CCGGCGUCGU----------GUCUA--------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 192018 0.71 0.745616
Target:  5'- uGGCCGCGGCugcuguuucugugGCGGc-GGCGGCUGc-- -3'
miRNA:   3'- -CCGGCGUCG-------------UGUCuaUCGCCGACuuc -5'
10708 5' -55.6 NC_002794.1 + 191870 0.78 0.349151
Target:  5'- aGGCCgGCGGCGgAGggGGCGGCgGAGGc -3'
miRNA:   3'- -CCGG-CGUCGUgUCuaUCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 190030 0.71 0.727144
Target:  5'- cGGCCgGUAGCGCAcGUAGC-GCUGAc- -3'
miRNA:   3'- -CCGG-CGUCGUGUcUAUCGcCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 188251 0.71 0.746579
Target:  5'- cGGCgGCGGCGgcGGUAGCGGCgGGc- -3'
miRNA:   3'- -CCGgCGUCGUguCUAUCGCCGaCUuc -5'
10708 5' -55.6 NC_002794.1 + 187236 1.1 0.003116
Target:  5'- uGGCCGCAGCACAGAUAGCGGCUGAAGu -3'
miRNA:   3'- -CCGGCGUCGUGUCUAUCGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 186389 0.66 0.940286
Target:  5'- cGCCGCAGcCGCAGcc-GCGGCc---- -3'
miRNA:   3'- cCGGCGUC-GUGUCuauCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 186312 0.66 0.942129
Target:  5'- cGCCGCGGCGCGcucguccuccaacacGAUcgacGGCGGCg---- -3'
miRNA:   3'- cCGGCGUCGUGU---------------CUA----UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 186208 0.72 0.667182
Target:  5'- gGGCCcCAGgGCAGAUGGCGGUccGGGu -3'
miRNA:   3'- -CCGGcGUCgUGUCUAUCGCCGacUUC- -5'
10708 5' -55.6 NC_002794.1 + 185571 0.67 0.888866
Target:  5'- uGCCGCGGCAgGGcgcGCGGCUc--- -3'
miRNA:   3'- cCGGCGUCGUgUCuauCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 184984 0.66 0.940286
Target:  5'- aGCaCGCAGCGCGcGA-AGCGGCg---- -3'
miRNA:   3'- cCG-GCGUCGUGU-CUaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 184059 0.73 0.593011
Target:  5'- gGGCCGCGGCgaaGCGGcacgcgcccacgguGUAGCGGCaGAAc -3'
miRNA:   3'- -CCGGCGUCG---UGUC--------------UAUCGCCGaCUUc -5'
10708 5' -55.6 NC_002794.1 + 182741 0.66 0.949132
Target:  5'- cGGCCccagaaagacGCGGUACAGGUAGCaGCc---- -3'
miRNA:   3'- -CCGG----------CGUCGUGUCUAUCGcCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 177957 0.7 0.784185
Target:  5'- aGGUCGguGgACGGugGUGGaCGGUUGGAGg -3'
miRNA:   3'- -CCGGCguCgUGUC--UAUC-GCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 176197 0.7 0.793271
Target:  5'- --aCGCuGUACGGGUGGCGGaugGAAGg -3'
miRNA:   3'- ccgGCGuCGUGUCUAUCGCCga-CUUC- -5'
10708 5' -55.6 NC_002794.1 + 160004 0.68 0.881999
Target:  5'- cGCuCGCGguGCGCAGAUGGcCGGUgucGGAGu -3'
miRNA:   3'- cCG-GCGU--CGUGUCUAUC-GCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 158533 0.67 0.901923
Target:  5'- -cCCGCAGCAgAGGacGCGGCcGAGa -3'
miRNA:   3'- ccGGCGUCGUgUCUauCGCCGaCUUc -5'
10708 5' -55.6 NC_002794.1 + 156414 0.78 0.356945
Target:  5'- cGGCCGCGGcCACGGccGGCGGgUGAGa -3'
miRNA:   3'- -CCGGCGUC-GUGUCuaUCGCCgACUUc -5'
10708 5' -55.6 NC_002794.1 + 153418 0.66 0.949132
Target:  5'- cGCCGC-GCGCGGAgccgAGCugGGCgUGGAc -3'
miRNA:   3'- cCGGCGuCGUGUCUa---UCG--CCG-ACUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.