miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 3' -59.3 NC_002794.1 + 192399 0.66 0.808712
Target:  5'- cGCCGcgCCGGGGUaguCGAaacgccGCGaCGGGUCc -3'
miRNA:   3'- uUGGUuaGGUCCCG---GCU------CGC-GUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 188939 0.66 0.808712
Target:  5'- aGGCCcgcuGUCC-GGG-CGuGCGCAGGUUc -3'
miRNA:   3'- -UUGGu---UAGGuCCCgGCuCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 186432 1.06 0.002257
Target:  5'- aAACCAAUCCAGGGCCGAGCGCAGGUCu -3'
miRNA:   3'- -UUGGUUAGGUCCCGGCUCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 184681 0.69 0.636749
Target:  5'- uACCAGUaCCAGGacGCCG-GCGgaGGGUCg -3'
miRNA:   3'- uUGGUUA-GGUCC--CGGCuCGCg-UCCAG- -5'
10709 3' -59.3 NC_002794.1 + 183662 0.73 0.409317
Target:  5'- -uCCGcgCCGGGcCCGAGCGCcgacGGGUCg -3'
miRNA:   3'- uuGGUuaGGUCCcGGCUCGCG----UCCAG- -5'
10709 3' -59.3 NC_002794.1 + 181876 0.7 0.537483
Target:  5'- cGCUGccCCGGGGUCGcgaacaggcgacAGCGCGGGUCg -3'
miRNA:   3'- uUGGUuaGGUCCCGGC------------UCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 179101 0.7 0.565905
Target:  5'- gAACCGuccggucGUCCGcGGuCCGGGCGCGcGGUCg -3'
miRNA:   3'- -UUGGU-------UAGGUcCC-GGCUCGCGU-CCAG- -5'
10709 3' -59.3 NC_002794.1 + 147208 0.66 0.773076
Target:  5'- uGCCGucgggCCGGGGCCGgGGCGUuGG-Cg -3'
miRNA:   3'- uUGGUua---GGUCCCGGC-UCGCGuCCaG- -5'
10709 3' -59.3 NC_002794.1 + 143407 0.68 0.666777
Target:  5'- cGACCGG--CGcGGGCCGGGCGaAGGUCc -3'
miRNA:   3'- -UUGGUUagGU-CCCGGCUCGCgUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 143102 0.69 0.596696
Target:  5'- cGGCguGuUCCAGccccgcucGGCCGuGGCGCAGGUCu -3'
miRNA:   3'- -UUGguU-AGGUC--------CCGGC-UCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 141659 0.67 0.725879
Target:  5'- cGGCCg--CCGgcGGGUCGAGCGaagaCGGGUCg -3'
miRNA:   3'- -UUGGuuaGGU--CCCGGCUCGC----GUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 140662 0.74 0.368339
Target:  5'- cGCgCAG-CUuuuGGGUCGGGCGCAGGUCg -3'
miRNA:   3'- uUG-GUUaGGu--CCCGGCUCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 138750 0.72 0.462062
Target:  5'- cGGCCc-UCCgGGGGCCGAGuCGCGgcGGUCg -3'
miRNA:   3'- -UUGGuuAGG-UCCCGGCUC-GCGU--CCAG- -5'
10709 3' -59.3 NC_002794.1 + 137771 0.67 0.745051
Target:  5'- aGAgCAGgauGGGGUCGAgGUGCAGGUCg -3'
miRNA:   3'- -UUgGUUaggUCCCGGCU-CGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 137571 0.74 0.337644
Target:  5'- cGCCGucgccgCCGGGGCCgGAGUGCGGGg- -3'
miRNA:   3'- uUGGUua----GGUCCCGG-CUCGCGUCCag -5'
10709 3' -59.3 NC_002794.1 + 130607 0.66 0.763843
Target:  5'- cGCCGAUCguGGGCCGguugacGGUGUucGGcGUCg -3'
miRNA:   3'- uUGGUUAGguCCCGGC------UCGCG--UC-CAG- -5'
10709 3' -59.3 NC_002794.1 + 128264 0.69 0.596696
Target:  5'- --gCGGU-CGGGGCCGAGCGCGGaGcCg -3'
miRNA:   3'- uugGUUAgGUCCCGGCUCGCGUC-CaG- -5'
10709 3' -59.3 NC_002794.1 + 120187 0.68 0.646773
Target:  5'- cGCCAagcgGUUCaAGGGCaCGAGCG-GGGUCg -3'
miRNA:   3'- uUGGU----UAGG-UCCCG-GCUCGCgUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 119947 0.66 0.773076
Target:  5'- cAGCCGcgCCAGcaGGUCGAGCGUgcucuGGUg -3'
miRNA:   3'- -UUGGUuaGGUC--CCGGCUCGCGu----CCAg -5'
10709 3' -59.3 NC_002794.1 + 118864 0.79 0.183565
Target:  5'- cGCagaAGUCCAGGGCC-AGCuGCAGGUCg -3'
miRNA:   3'- uUGg--UUAGGUCCCGGcUCG-CGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.