Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10709 | 5' | -60.8 | NC_002794.1 | + | 187766 | 0.66 | 0.773433 |
Target: 5'- --cGCCGGCGCCggucgcCUCGaC-CCcGGAGGa -3' miRNA: 3'- aguCGGCUGCGG------GAGC-GaGGaCCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 186466 | 1.11 | 0.001183 |
Target: 5'- uUCAGCCGACGCCCUCGCUCCUGGAGGg -3' miRNA: 3'- -AGUCGGCUGCGGGAGCGAGGACCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 185552 | 0.68 | 0.6901 |
Target: 5'- cCGGCCGcGCGCCC-CGC-CCUgccgcGGcAGGg -3' miRNA: 3'- aGUCGGC-UGCGGGaGCGaGGA-----CC-UCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 183618 | 0.66 | 0.764522 |
Target: 5'- gCGGCCGGCGCCCcCGCgcccccgacUCgaGcAGGg -3' miRNA: 3'- aGUCGGCUGCGGGaGCG---------AGgaCcUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 182915 | 0.66 | 0.782231 |
Target: 5'- gUAGUCGAUGUCgUCGCU-CUGGAa- -3' miRNA: 3'- aGUCGGCUGCGGgAGCGAgGACCUcc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 181547 | 0.66 | 0.764522 |
Target: 5'- -gGGCCGGCGCUCUCGgUCgCcGGGc- -3' miRNA: 3'- agUCGGCUGCGGGAGCgAG-GaCCUcc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 180909 | 0.68 | 0.670909 |
Target: 5'- cUCGGCCG-CGgUCUCGCcggcgCCgucGGAGGu -3' miRNA: 3'- -AGUCGGCuGCgGGAGCGa----GGa--CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 150873 | 0.67 | 0.712896 |
Target: 5'- aUAGCCGGCGCagcgaccugcucuaCaUCGuCUCCgaGGAGGg -3' miRNA: 3'- aGUCGGCUGCGg-------------G-AGC-GAGGa-CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 150416 | 0.71 | 0.48132 |
Target: 5'- -aAGCCGugGCCCgcgagGCUggaCCUGGAGu -3' miRNA: 3'- agUCGGCugCGGGag---CGA---GGACCUCc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 138211 | 0.66 | 0.799458 |
Target: 5'- aCGGCUucCGuCCCgcggCGCagCUGGAGGa -3' miRNA: 3'- aGUCGGcuGC-GGGa---GCGagGACCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 137151 | 0.71 | 0.472397 |
Target: 5'- cCGGCCGGcCGCCCUCGgUCCcGGc-- -3' miRNA: 3'- aGUCGGCU-GCGGGAGCgAGGaCCucc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 131285 | 0.7 | 0.536431 |
Target: 5'- --cGCCGGCGCCgUCGCUCCgccgcccgUGGucGu -3' miRNA: 3'- aguCGGCUGCGGgAGCGAGG--------ACCucC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 130277 | 0.67 | 0.699635 |
Target: 5'- gCGGuuGAgcCGCCgCUCGCUCCcGGGuccGGa -3' miRNA: 3'- aGUCggCU--GCGG-GAGCGAGGaCCU---CC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 121939 | 0.68 | 0.651604 |
Target: 5'- -aGGCCGACGCgCUgaucgaGCgCCUGGAGc -3' miRNA: 3'- agUCGGCUGCGgGAg-----CGaGGACCUCc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 121807 | 0.68 | 0.661267 |
Target: 5'- cCGGCCGGCGCCUgcCGCUgCaGGAu- -3' miRNA: 3'- aGUCGGCUGCGGGa-GCGAgGaCCUcc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 115599 | 0.67 | 0.746392 |
Target: 5'- gCGGUCGAC-CCgCUCGC-CCggcgccgGGAGGc -3' miRNA: 3'- aGUCGGCUGcGG-GAGCGaGGa------CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 114746 | 0.66 | 0.755506 |
Target: 5'- -gAGCCGGCGCCgCcCGCcggcgccggUCCUcggcggcgaGGAGGa -3' miRNA: 3'- agUCGGCUGCGG-GaGCG---------AGGA---------CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 107284 | 0.68 | 0.680522 |
Target: 5'- --cGCCGuCGCCCcgucgucgaCGCUCCUcgcGGGGGc -3' miRNA: 3'- aguCGGCuGCGGGa--------GCGAGGA---CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 102888 | 0.68 | 0.641927 |
Target: 5'- -uGGCCGACcugguGCCCaaGCgggucuaCCUGGGGGa -3' miRNA: 3'- agUCGGCUG-----CGGGagCGa------GGACCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 101701 | 0.67 | 0.699635 |
Target: 5'- -gAGCCGGCGCCCgaggacgUGUUCgUGGugcacguGGg -3' miRNA: 3'- agUCGGCUGCGGGa------GCGAGgACCu------CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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