Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 123605 | 0.69 | 0.997471 |
Target: 5'- cCGGAAcgccuguGGGAcGCGCUGCGCGA--GGACa -3' miRNA: 3'- -GCUUU-------CUCU-CGCGAUGUGUUugUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 139978 | 0.69 | 0.997515 |
Target: 5'- aGAAAGAgauGAGCGCgACGCgGGACGGuGCg -3' miRNA: 3'- gCUUUCU---CUCGCGaUGUG-UUUGUC-UG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 108158 | 0.69 | 0.997805 |
Target: 5'- ----cGGGAGCGCcgGCGCGAagacgccgcgacgcGCGGACu -3' miRNA: 3'- gcuuuCUCUCGCGa-UGUGUU--------------UGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 114404 | 0.69 | 0.99792 |
Target: 5'- uGAuGGAGcAGCGCgucguaACACAGcccGCGGACc -3' miRNA: 3'- gCUuUCUC-UCGCGa-----UGUGUU---UGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 108660 | 0.69 | 0.99792 |
Target: 5'- gGAAAGAGaAGCuGCUcuGCGCu--CAGACc -3' miRNA: 3'- gCUUUCUC-UCG-CGA--UGUGuuuGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 44307 | 0.69 | 0.998268 |
Target: 5'- gCGAGgcGGGGAGCGac-CGCGAGCGcGGCg -3' miRNA: 3'- -GCUU--UCUCUCGCgauGUGUUUGU-CUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 152974 | 0.69 | 0.998268 |
Target: 5'- uGGucGGG-GCGCUuCGCcGACAGGCg -3' miRNA: 3'- gCUuuCUCuCGCGAuGUGuUUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 96879 | 0.68 | 0.998566 |
Target: 5'- aCGGAcGGuGGCGCUACG-GGGCAGGCg -3' miRNA: 3'- -GCUUuCUcUCGCGAUGUgUUUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 113143 | 0.68 | 0.998566 |
Target: 5'- gGAAGGGcGGGCGCgucagcguguaGCGCGcGCGGGCg -3' miRNA: 3'- gCUUUCU-CUCGCGa----------UGUGUuUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 110922 | 0.68 | 0.998566 |
Target: 5'- -cGAAGAGGuCGCU-CACGuACAGACa -3' miRNA: 3'- gcUUUCUCUcGCGAuGUGUuUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 22162 | 0.68 | 0.999213 |
Target: 5'- uCGAGuGAGcaccGGCGCUcCACGGACGGcCg -3' miRNA: 3'- -GCUUuCUC----UCGCGAuGUGUUUGUCuG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 106296 | 0.68 | 0.999349 |
Target: 5'- gCGAGAGAcgacgacgacgacGAGCGCgACGCGcgcGACGGGu -3' miRNA: 3'- -GCUUUCU-------------CUCGCGaUGUGU---UUGUCUg -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 136090 | 0.68 | 0.999363 |
Target: 5'- gCGggGGAGgcguagacgucGGCGUccUGCACcuGGCGGGCg -3' miRNA: 3'- -GCuuUCUC-----------UCGCG--AUGUGu-UUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 151769 | 0.67 | 0.999488 |
Target: 5'- uCGAGauGGAGAccgcGcCGCUGCACGc-CAGACg -3' miRNA: 3'- -GCUU--UCUCU----C-GCGAUGUGUuuGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 107638 | 0.67 | 0.999488 |
Target: 5'- aCGAAGaGGAGCGCgaacguCGCGAGgAGAg -3' miRNA: 3'- -GCUUUcUCUCGCGau----GUGUUUgUCUg -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 43067 | 0.67 | 0.999591 |
Target: 5'- cCGAAAcAGGGCGUUcuCGCAgcuguAGCGGACg -3' miRNA: 3'- -GCUUUcUCUCGCGAu-GUGU-----UUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 116400 | 0.67 | 0.999591 |
Target: 5'- aCGAAGGuGuGGCGggGCGCGAGCaccaGGGCg -3' miRNA: 3'- -GCUUUCuC-UCGCgaUGUGUUUG----UCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 22217 | 0.67 | 0.999652 |
Target: 5'- aCGAAcGAGGGacacacacaCGCUcgacacacggaggcACGCGAACGGGCg -3' miRNA: 3'- -GCUUuCUCUC---------GCGA--------------UGUGUUUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 104901 | 0.67 | 0.999675 |
Target: 5'- ----cGAGGcgccGUGCUGCuCGAGCAGGCg -3' miRNA: 3'- gcuuuCUCU----CGCGAUGuGUUUGUCUG- -5' |
|||||||
10710 | 3' | -47.6 | NC_002794.1 | + | 69368 | 0.67 | 0.999675 |
Target: 5'- gGAGAucGGGCGCgacgaaGCGAACAGAa -3' miRNA: 3'- gCUUUcuCUCGCGaug---UGUUUGUCUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home