miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 3' -47.6 NC_002794.1 + 192931 0.72 0.979131
Target:  5'- uCGAGAuGAacggccAGCaGCUGCGCAGACAGGCc -3'
miRNA:   3'- -GCUUU-CUc-----UCG-CGAUGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 185719 1.12 0.014915
Target:  5'- gCGAAAGAGAGCGCUACACAAACAGACa -3'
miRNA:   3'- -GCUUUCUCUCGCGAUGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 182449 0.7 0.995185
Target:  5'- uCGGucucGGAGAGCGCggcggUGCGCGgcgucAGCAGAUa -3'
miRNA:   3'- -GCUu---UCUCUCGCG-----AUGUGU-----UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 179619 0.66 0.99986
Target:  5'- gCGAgcGAcugccGGGCGCUGCGacggaaaggagaaguCAGGCGGGCu -3'
miRNA:   3'- -GCUuuCU-----CUCGCGAUGU---------------GUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 157738 0.75 0.923502
Target:  5'- gCGGAGGAGAGCGUUcGCGCucaguuCGGGCc -3'
miRNA:   3'- -GCUUUCUCUCGCGA-UGUGuuu---GUCUG- -5'
10710 3' -47.6 NC_002794.1 + 155531 0.7 0.99589
Target:  5'- uCGGGuuuGGAGCuGUUGCACcGACGGACg -3'
miRNA:   3'- -GCUUuc-UCUCG-CGAUGUGuUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 152974 0.69 0.998268
Target:  5'- uGGucGGG-GCGCUuCGCcGACAGGCg -3'
miRNA:   3'- gCUuuCUCuCGCGAuGUGuUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 151769 0.67 0.999488
Target:  5'- uCGAGauGGAGAccgcGcCGCUGCACGc-CAGACg -3'
miRNA:   3'- -GCUU--UCUCU----C-GCGAUGUGUuuGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 149668 0.67 0.999744
Target:  5'- cCGAgcGGGGGCGCgucGCGCucGACuGGCc -3'
miRNA:   3'- -GCUuuCUCUCGCGa--UGUGu-UUGuCUG- -5'
10710 3' -47.6 NC_002794.1 + 145234 0.69 0.996508
Target:  5'- uCGGAGGcgcGcGCGCUGCGgAAGCGGAUc -3'
miRNA:   3'- -GCUUUCu--CuCGCGAUGUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 139978 0.69 0.997515
Target:  5'- aGAAAGAgauGAGCGCgACGCgGGACGGuGCg -3'
miRNA:   3'- gCUUUCU---CUCGCGaUGUG-UUUGUC-UG- -5'
10710 3' -47.6 NC_002794.1 + 139195 0.7 0.995478
Target:  5'- uCGAAGGccaugacggcgacgaAGGGCGuCUGCAgGAGCAGGa -3'
miRNA:   3'- -GCUUUC---------------UCUCGC-GAUGUgUUUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 136090 0.68 0.999363
Target:  5'- gCGggGGAGgcguagacgucGGCGUccUGCACcuGGCGGGCg -3'
miRNA:   3'- -GCuuUCUC-----------UCGCG--AUGUGu-UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 134008 0.7 0.99589
Target:  5'- cCGGGuGcGAGCGCUGCACGGuCGGGu -3'
miRNA:   3'- -GCUUuCuCUCGCGAUGUGUUuGUCUg -5'
10710 3' -47.6 NC_002794.1 + 131712 0.69 0.997047
Target:  5'- cCGGAccccGAGAGCGa---GCGAGCGGGCg -3'
miRNA:   3'- -GCUUu---CUCUCGCgaugUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 129893 0.67 0.999675
Target:  5'- gCGGGAGAGcgaacGGCGCUgggagcACGCGAuucgcCAGGCc -3'
miRNA:   3'- -GCUUUCUC-----UCGCGA------UGUGUUu----GUCUG- -5'
10710 3' -47.6 NC_002794.1 + 126696 0.67 0.9998
Target:  5'- gGAGGGAgGGGCGC--CGCGGACucgGGGCg -3'
miRNA:   3'- gCUUUCU-CUCGCGauGUGUUUG---UCUG- -5'
10710 3' -47.6 NC_002794.1 + 125576 0.66 0.99993
Target:  5'- aGGAGGAGAGCGaca-GCGAGgAGuCg -3'
miRNA:   3'- gCUUUCUCUCGCgaugUGUUUgUCuG- -5'
10710 3' -47.6 NC_002794.1 + 125327 0.66 0.99988
Target:  5'- cCGAGccGGAGCGCgccacgGCGCAccGGCAGcCg -3'
miRNA:   3'- -GCUUucUCUCGCGa-----UGUGU--UUGUCuG- -5'
10710 3' -47.6 NC_002794.1 + 123605 0.69 0.997471
Target:  5'- cCGGAAcgccuguGGGAcGCGCUGCGCGA--GGACa -3'
miRNA:   3'- -GCUUU-------CUCU-CGCGAUGUGUUugUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.