miRNA display CGI


Results 1 - 20 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 95822 0.66 0.538825
Target:  5'- gGCGg-CGGCCGggggagCGGCgGCGGCgGCCg -3'
miRNA:   3'- -CGCagGUCGGCg-----GCCG-CGCCGgCGGg -5'
10710 5' -66.9 NC_002794.1 + 53069 0.66 0.538825
Target:  5'- aGCG-CCGcGCCGCCaGCucGCGGCaccggGCCa -3'
miRNA:   3'- -CGCaGGU-CGGCGGcCG--CGCCGg----CGGg -5'
10710 5' -66.9 NC_002794.1 + 137167 0.66 0.538825
Target:  5'- -gGUcCCGGCCGCUcGCuCGcCCGCCCc -3'
miRNA:   3'- cgCA-GGUCGGCGGcCGcGCcGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 91867 0.66 0.538825
Target:  5'- aGgGUCCcggGGgUGgCGGCgGCGGCCGCg- -3'
miRNA:   3'- -CgCAGG---UCgGCgGCCG-CGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 79439 0.66 0.538825
Target:  5'- gGCGg-CGGCggCGaCCGGCGCGgagacgacgacGCCGCCa -3'
miRNA:   3'- -CGCagGUCG--GC-GGCCGCGC-----------CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 36279 0.66 0.538825
Target:  5'- cGCGUCCcGCgacUGCgGGUGCacgaGCuCGCCCc -3'
miRNA:   3'- -CGCAGGuCG---GCGgCCGCGc---CG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 182257 0.66 0.538825
Target:  5'- aGCGa-CAGCgCGCCGaGUcccgaGCGGCCuCCCa -3'
miRNA:   3'- -CGCagGUCG-GCGGC-CG-----CGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 48065 0.66 0.538825
Target:  5'- gGCGcugauggCCGGCCaGCgGGaGCaGCCGCCg -3'
miRNA:   3'- -CGCa------GGUCGG-CGgCCgCGcCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 67724 0.66 0.538825
Target:  5'- gGgGcUCGGUC-CCGGCgGCGGCCaCCCg -3'
miRNA:   3'- -CgCaGGUCGGcGGCCG-CGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 103998 0.66 0.538825
Target:  5'- cGCGaagCC-GCCGCCGGCG-GaaCGCCUc -3'
miRNA:   3'- -CGCa--GGuCGGCGGCCGCgCcgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 47405 0.66 0.538825
Target:  5'- cCGaagCC-GCCGUCGGCGCcGUCGCgCg -3'
miRNA:   3'- cGCa--GGuCGGCGGCCGCGcCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 114639 0.66 0.537923
Target:  5'- cGCGgagcUCgAGCUGCCGGUgcuguucGCGcGCgCGCCg -3'
miRNA:   3'- -CGC----AGgUCGGCGGCCG-------CGC-CG-GCGGg -5'
10710 5' -66.9 NC_002794.1 + 62338 0.66 0.537923
Target:  5'- gGCGgagCCcG-CGCCGGCGCaccuggucucguuGGaCCGCUCg -3'
miRNA:   3'- -CGCa--GGuCgGCGGCCGCG-------------CC-GGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 36156 0.66 0.536122
Target:  5'- --cUCC-GCCGCCGccucccccccacccGCGCcccgGGCCGCCa -3'
miRNA:   3'- cgcAGGuCGGCGGC--------------CGCG----CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 81227 0.66 0.533425
Target:  5'- uCGUCCccccgGGCCGCgCGcgcaccacggacgacGCGCuGGCCuucGCCCg -3'
miRNA:   3'- cGCAGG-----UCGGCG-GC---------------CGCG-CCGG---CGGG- -5'
10710 5' -66.9 NC_002794.1 + 187940 0.66 0.529836
Target:  5'- cGCGUCacgcguGCgCGCgCGaGCGCgggaccucgggaGGCCGCUCa -3'
miRNA:   3'- -CGCAGgu----CG-GCG-GC-CGCG------------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 67835 0.66 0.529836
Target:  5'- cCGgCCcGCCGucgcCCGGCGCcGCCGCgCg -3'
miRNA:   3'- cGCaGGuCGGC----GGCCGCGcCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 141448 0.66 0.529836
Target:  5'- gGCG-CCGGgaG-CGGCGCGG-CGUCCg -3'
miRNA:   3'- -CGCaGGUCggCgGCCGCGCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 148136 0.66 0.529836
Target:  5'- cGCGg--GGCCGCCGGggcgaggGCGGUCGCg- -3'
miRNA:   3'- -CGCaggUCGGCGGCCg------CGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 14571 0.66 0.529836
Target:  5'- gGCGagCCGGCCGaCCGaaGCG-GGCCGUg- -3'
miRNA:   3'- -CGCa-GGUCGGC-GGC--CGCgCCGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.