miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 54951 0.66 0.989702
Target:  5'- gUCAGCUCgGAGaacuccuugcccccuUGCacgacccgccGCGGCGACGGCg -3'
miRNA:   3'- -GGUCGAGgUUC---------------AUGc---------CGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 145563 0.66 0.989163
Target:  5'- aCCGGUUCgcggaCGAGcgccgACGG-AGCGGCGGCc -3'
miRNA:   3'- -GGUCGAG-----GUUCa----UGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 91737 0.66 0.989163
Target:  5'- cUCGGCggCCAacaaGGUGcCGGCgGGCGGCAccGCg -3'
miRNA:   3'- -GGUCGa-GGU----UCAU-GCCG-UCGUUGU--CG- -5'
10711 3' -52.8 NC_002794.1 + 166992 0.66 0.989163
Target:  5'- uCCAGUUCCGgacAGccaACGGUuccuGGUuACAGCg -3'
miRNA:   3'- -GGUCGAGGU---UCa--UGCCG----UCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 116470 0.66 0.989163
Target:  5'- gCCGGUUCUuGGUGcCGGC-GUAGC-GCa -3'
miRNA:   3'- -GGUCGAGGuUCAU-GCCGuCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 115073 0.66 0.989163
Target:  5'- uCCAG-UCCAcGgccuCGGCGGCcgcccGCAGCc -3'
miRNA:   3'- -GGUCgAGGUuCau--GCCGUCGu----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 70240 0.66 0.989163
Target:  5'- gCCGGCcgccCCGcAGcagACGcGCAGCGACGGa -3'
miRNA:   3'- -GGUCGa---GGU-UCa--UGC-CGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 59896 0.66 0.989163
Target:  5'- aCCuGCgCCGcGUGC-GCAGCGACAuggGCg -3'
miRNA:   3'- -GGuCGaGGUuCAUGcCGUCGUUGU---CG- -5'
10711 3' -52.8 NC_002794.1 + 57310 0.66 0.987718
Target:  5'- aCC-GCgaccCCGAGUACcuGCAGCGcguccugcuGCAGCu -3'
miRNA:   3'- -GGuCGa---GGUUCAUGc-CGUCGU---------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 71578 0.66 0.987718
Target:  5'- uCCGGUacacgcgcuUCCAc-UGCGGCugGGCgAACAGCa -3'
miRNA:   3'- -GGUCG---------AGGUucAUGCCG--UCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 67398 0.66 0.987718
Target:  5'- gCCAGCgucggcgCCAGcGU-CGGCgccAGCGucgGCGGCg -3'
miRNA:   3'- -GGUCGa------GGUU-CAuGCCG---UCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 60870 0.66 0.987718
Target:  5'- gCCGGCUCuCAAGUAcauCGGC-GCcgUGGUc -3'
miRNA:   3'- -GGUCGAG-GUUCAU---GCCGuCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 85282 0.66 0.987718
Target:  5'- cUCGGCUCC-GGUcaGCGGCugagacgaGGCGACGa- -3'
miRNA:   3'- -GGUCGAGGuUCA--UGCCG--------UCGUUGUcg -5'
10711 3' -52.8 NC_002794.1 + 104469 0.66 0.987718
Target:  5'- gCGGCgugugCAGGaUGCgGGCGGCcACGGCg -3'
miRNA:   3'- gGUCGag---GUUC-AUG-CCGUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 190929 0.66 0.987718
Target:  5'- cCCGGC-CCGcAGc-CGGUAGC-ACGGCc -3'
miRNA:   3'- -GGUCGaGGU-UCauGCCGUCGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 114062 0.66 0.987718
Target:  5'- aCCAGCUCCGuGaGCucGCGGuCGugAGCc -3'
miRNA:   3'- -GGUCGAGGUuCaUGc-CGUC-GUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 111138 0.66 0.987718
Target:  5'- gCCGguGCUCCAc--GCGGUAGCGGgucaGGCa -3'
miRNA:   3'- -GGU--CGAGGUucaUGCCGUCGUUg---UCG- -5'
10711 3' -52.8 NC_002794.1 + 122944 0.66 0.986129
Target:  5'- gCGGaaCC-GGUGCGGCuggAGCGugAGCc -3'
miRNA:   3'- gGUCgaGGuUCAUGCCG---UCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 151918 0.66 0.986129
Target:  5'- gCCgAGCUCCGucUGCGGC-GCA--AGCg -3'
miRNA:   3'- -GG-UCGAGGUucAUGCCGuCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 188980 0.66 0.986129
Target:  5'- cCCAGCUcggCCAccAGccaGCGGCAGCucuccaggucgcGACAGg -3'
miRNA:   3'- -GGUCGA---GGU--UCa--UGCCGUCG------------UUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.