miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 5' -64 NC_002794.1 + 187763 0.66 0.654546
Target:  5'- -cGCCGCCG-GcGCCgGUCGCCu---- -3'
miRNA:   3'- guCGGCGGCgC-CGGgCAGCGGcaucg -5'
10711 5' -64 NC_002794.1 + 105230 0.66 0.654546
Target:  5'- gGGCCGUgCGCGGCgCCa-CGCUgcacuuGUAGCa -3'
miRNA:   3'- gUCGGCG-GCGCCG-GGcaGCGG------CAUCG- -5'
10711 5' -64 NC_002794.1 + 96360 0.66 0.654546
Target:  5'- -cGCCugGCCGagGGCaCCGUggCGCCG-AGCg -3'
miRNA:   3'- guCGG--CGGCg-CCG-GGCA--GCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 100380 0.66 0.654546
Target:  5'- uGGCCGacguCCGCGGCgUGgaCGaCGUGGCg -3'
miRNA:   3'- gUCGGC----GGCGCCGgGCa-GCgGCAUCG- -5'
10711 5' -64 NC_002794.1 + 120439 0.66 0.654546
Target:  5'- uCAGCCGgCGUGgaacGCCgCGUCgGCC-UGGCu -3'
miRNA:   3'- -GUCGGCgGCGC----CGG-GCAG-CGGcAUCG- -5'
10711 5' -64 NC_002794.1 + 147208 0.66 0.654546
Target:  5'- -uGCCGUCG-GGCCgGg-GCCGgGGCg -3'
miRNA:   3'- guCGGCGGCgCCGGgCagCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 112864 0.66 0.654546
Target:  5'- gCAGCUGCUgcaGCGcGCCCacgggaUCGUCGUGGa -3'
miRNA:   3'- -GUCGGCGG---CGC-CGGGc-----AGCGGCAUCg -5'
10711 5' -64 NC_002794.1 + 74025 0.66 0.654546
Target:  5'- uCGGCCGCCacccCGGCCCccgaGCCccgAGCc -3'
miRNA:   3'- -GUCGGCGGc---GCCGGGcag-CGGca-UCG- -5'
10711 5' -64 NC_002794.1 + 115183 0.66 0.654546
Target:  5'- aCGGCCcgguGCCgGCGGUCgaGcCGgCGUAGCg -3'
miRNA:   3'- -GUCGG----CGG-CGCCGGg-CaGCgGCAUCG- -5'
10711 5' -64 NC_002794.1 + 143094 0.66 0.653598
Target:  5'- aGGuuG-CGCGGCgUGUUccagccccgcucgGCCGUGGCg -3'
miRNA:   3'- gUCggCgGCGCCGgGCAG-------------CGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 182553 0.66 0.650751
Target:  5'- -cGCCGCgGcCGGCaCCGUCaCCGggaucuccgugcgGGCg -3'
miRNA:   3'- guCGGCGgC-GCCG-GGCAGcGGCa------------UCG- -5'
10711 5' -64 NC_002794.1 + 104891 0.66 0.645055
Target:  5'- gGGCCgGCCGCgaGGCgCCGU-GCUGcucgAGCa -3'
miRNA:   3'- gUCGG-CGGCG--CCG-GGCAgCGGCa---UCG- -5'
10711 5' -64 NC_002794.1 + 75653 0.66 0.645055
Target:  5'- gAGCgGCaGCGGCgCCGUCcGCCGcuacacGCu -3'
miRNA:   3'- gUCGgCGgCGCCG-GGCAG-CGGCau----CG- -5'
10711 5' -64 NC_002794.1 + 185202 0.66 0.645055
Target:  5'- gCGGUCaUCGCGGCUCG-CGCCGcGGa -3'
miRNA:   3'- -GUCGGcGGCGCCGGGCaGCGGCaUCg -5'
10711 5' -64 NC_002794.1 + 58769 0.66 0.645055
Target:  5'- gAGCCGCUGCuGGCCuaCGUCaGCgCGcuGCa -3'
miRNA:   3'- gUCGGCGGCG-CCGG--GCAG-CG-GCauCG- -5'
10711 5' -64 NC_002794.1 + 95020 0.66 0.645055
Target:  5'- gGGCgGCUguGCGGCaucUCGCCgGUGGCg -3'
miRNA:   3'- gUCGgCGG--CGCCGggcAGCGG-CAUCG- -5'
10711 5' -64 NC_002794.1 + 116863 0.66 0.645055
Target:  5'- gCGGCgGCCGUGucgcGCUCGUcaggggggCGCCGgcGCc -3'
miRNA:   3'- -GUCGgCGGCGC----CGGGCA--------GCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 90081 0.66 0.645055
Target:  5'- uGGCCGauGUGGCUCGgcacgcucugCGCCGcggugGGCg -3'
miRNA:   3'- gUCGGCggCGCCGGGCa---------GCGGCa----UCG- -5'
10711 5' -64 NC_002794.1 + 193738 0.66 0.645055
Target:  5'- -cGCCGcCCGCGGCU--UCGgCG-AGCg -3'
miRNA:   3'- guCGGC-GGCGCCGGgcAGCgGCaUCG- -5'
10711 5' -64 NC_002794.1 + 143047 0.66 0.645055
Target:  5'- gGGCCGCCa-GG-UUGagGCCGUAGCg -3'
miRNA:   3'- gUCGGCGGcgCCgGGCagCGGCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.