miRNA display CGI


Results 21 - 40 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 5' -64 NC_002794.1 + 66018 0.77 0.145417
Target:  5'- aGGCgGCCGCGGUcgucgCCGUCGUCGUcgGGCc -3'
miRNA:   3'- gUCGgCGGCGCCG-----GGCAGCGGCA--UCG- -5'
10711 5' -64 NC_002794.1 + 187862 0.77 0.148924
Target:  5'- cCAGCCGCgCGCGGCUCGcCGCU--AGCu -3'
miRNA:   3'- -GUCGGCG-GCGCCGGGCaGCGGcaUCG- -5'
10711 5' -64 NC_002794.1 + 65239 0.77 0.152508
Target:  5'- gCGGUCGCCGCGGCggcgauCCGgccUCGCCG-AGCg -3'
miRNA:   3'- -GUCGGCGGCGCCG------GGC---AGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 185758 0.77 0.15617
Target:  5'- cCAGCCGCCggcGCGGCCgcccgucacaCGUCGgCCGgcGCg -3'
miRNA:   3'- -GUCGGCGG---CGCCGG----------GCAGC-GGCauCG- -5'
10711 5' -64 NC_002794.1 + 105502 0.77 0.15617
Target:  5'- gAGCCGCCGCcGCCgGUCgcGCCGUccgaAGCg -3'
miRNA:   3'- gUCGGCGGCGcCGGgCAG--CGGCA----UCG- -5'
10711 5' -64 NC_002794.1 + 48585 0.77 0.159911
Target:  5'- gAGCCGgaggaGCGGCgCGUCGCCGUcGGCg -3'
miRNA:   3'- gUCGGCgg---CGCCGgGCAGCGGCA-UCG- -5'
10711 5' -64 NC_002794.1 + 49016 0.77 0.159911
Target:  5'- -cGCCGCgGCGGCCgcggCGUCGuCCGgcGCg -3'
miRNA:   3'- guCGGCGgCGCCGG----GCAGC-GGCauCG- -5'
10711 5' -64 NC_002794.1 + 48633 0.76 0.163733
Target:  5'- gCGGCCGUCGgGGCCCGcgaGCCGccGCa -3'
miRNA:   3'- -GUCGGCGGCgCCGGGCag-CGGCauCG- -5'
10711 5' -64 NC_002794.1 + 12187 0.76 0.163733
Target:  5'- -cGCCGCCGCGGCCgGgCGCCGc--- -3'
miRNA:   3'- guCGGCGGCGCCGGgCaGCGGCaucg -5'
10711 5' -64 NC_002794.1 + 61525 0.76 0.167243
Target:  5'- gCGGCCGCCgGCGGCCgccgcgaagacgaCGcCGCCGcGGCg -3'
miRNA:   3'- -GUCGGCGG-CGCCGG-------------GCaGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 105901 0.76 0.167243
Target:  5'- gAGUCGCCGCGGCggcggcgcuaccgCCGcCGCCGgacgGGCu -3'
miRNA:   3'- gUCGGCGGCGCCG-------------GGCaGCGGCa---UCG- -5'
10711 5' -64 NC_002794.1 + 104420 0.76 0.167637
Target:  5'- uCGGCCucgGCCGcCGGCCCGgacgcCGCCGcgGGCg -3'
miRNA:   3'- -GUCGG---CGGC-GCCGGGCa----GCGGCa-UCG- -5'
10711 5' -64 NC_002794.1 + 189876 0.76 0.175696
Target:  5'- -cGCCGCCGacCGGCCCGcucgggccCGCCGUcAGCg -3'
miRNA:   3'- guCGGCGGC--GCCGGGCa-------GCGGCA-UCG- -5'
10711 5' -64 NC_002794.1 + 188337 0.76 0.175696
Target:  5'- -cGCCGCCgGCGGCgCCGUCGCgccCGUccGGCc -3'
miRNA:   3'- guCGGCGG-CGCCG-GGCAGCG---GCA--UCG- -5'
10711 5' -64 NC_002794.1 + 146001 0.76 0.175696
Target:  5'- aCGGCCGCCGgGGCCgGagaCGCCGUcccAGUc -3'
miRNA:   3'- -GUCGGCGGCgCCGGgCa--GCGGCA---UCG- -5'
10711 5' -64 NC_002794.1 + 121257 0.76 0.179854
Target:  5'- -cGCCGCCGCGGCCuCGgcacCGUCcUGGCu -3'
miRNA:   3'- guCGGCGGCGCCGG-GCa---GCGGcAUCG- -5'
10711 5' -64 NC_002794.1 + 35767 0.75 0.188431
Target:  5'- ---aCGUCGCGGCaCCGUCGCCGgcGUc -3'
miRNA:   3'- gucgGCGGCGCCG-GGCAGCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 130674 0.75 0.192853
Target:  5'- gGGCucCGCCGCGGCCuCGUgggaggCGCCGUgucGGCa -3'
miRNA:   3'- gUCG--GCGGCGCCGG-GCA------GCGGCA---UCG- -5'
10711 5' -64 NC_002794.1 + 143866 0.75 0.192853
Target:  5'- -cGCCGCCGCGGCgucaaauauggCC-UCGCCG-AGCg -3'
miRNA:   3'- guCGGCGGCGCCG-----------GGcAGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 56570 0.75 0.197365
Target:  5'- -cGCCGCCGaCcGCCCG-CGCCGcGGCg -3'
miRNA:   3'- guCGGCGGC-GcCGGGCaGCGGCaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.