miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10712 3' -53.3 NC_002794.1 + 145894 0.66 0.985209
Target:  5'- aGCGGCGAGCGcgacggggGAGUC-GACCgCgCCGAg -3'
miRNA:   3'- -UGCUGCUUGC--------UUCAGuCUGG-GaGGUU- -5'
10712 3' -53.3 NC_002794.1 + 78812 0.66 0.985209
Target:  5'- aACGACG--UGAGGUCGGcCUgUCCGAu -3'
miRNA:   3'- -UGCUGCuuGCUUCAGUCuGGgAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 73079 0.66 0.985209
Target:  5'- -gGACGGGCGcaccGUCaAGAUCUUCCAGg -3'
miRNA:   3'- ugCUGCUUGCuu--CAG-UCUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 177717 0.66 0.985209
Target:  5'- uACGGCGGuccACGggG-CGGAUCCgaCCGAc -3'
miRNA:   3'- -UGCUGCU---UGCuuCaGUCUGGGa-GGUU- -5'
10712 3' -53.3 NC_002794.1 + 78331 0.66 0.985209
Target:  5'- cGCGACGGGCGGAggcgccggaauGUCGG-CCagcagCUCCAAc -3'
miRNA:   3'- -UGCUGCUUGCUU-----------CAGUCuGG-----GAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 20547 0.66 0.983385
Target:  5'- gACGACGGGCGAc--CGGAUCCcgCCGu -3'
miRNA:   3'- -UGCUGCUUGCUucaGUCUGGGa-GGUu -5'
10712 3' -53.3 NC_002794.1 + 180080 0.66 0.983385
Target:  5'- aGCGGCGGACGGuaucGGUgcgCAGGgCUUCCGu -3'
miRNA:   3'- -UGCUGCUUGCU----UCA---GUCUgGGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 62500 0.66 0.979233
Target:  5'- gACGGCGGGCGgcGcCGccGGCgCCUCCGc -3'
miRNA:   3'- -UGCUGCUUGCuuCaGU--CUG-GGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 179638 0.66 0.979233
Target:  5'- uGCGACGGAaaggaGAAGUCAGgcggGCUCgCCGGa -3'
miRNA:   3'- -UGCUGCUUg----CUUCAGUC----UGGGaGGUU- -5'
10712 3' -53.3 NC_002794.1 + 101653 0.66 0.97689
Target:  5'- -gGGCGGGCGGcGGUUAG-CCCgUCCGAa -3'
miRNA:   3'- ugCUGCUUGCU-UCAGUCuGGG-AGGUU- -5'
10712 3' -53.3 NC_002794.1 + 117042 0.66 0.97689
Target:  5'- cCGACaGcACGAGGUaCGGGCCgUCCGu -3'
miRNA:   3'- uGCUG-CuUGCUUCA-GUCUGGgAGGUu -5'
10712 3' -53.3 NC_002794.1 + 129950 0.66 0.974358
Target:  5'- gGCGGCGGcucUGGAGaccUCGGuCCCUCCGGu -3'
miRNA:   3'- -UGCUGCUu--GCUUC---AGUCuGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 141877 0.66 0.974358
Target:  5'- uCGACGGACGAA---AGACuCCUCCc- -3'
miRNA:   3'- uGCUGCUUGCUUcagUCUG-GGAGGuu -5'
10712 3' -53.3 NC_002794.1 + 110636 0.66 0.974358
Target:  5'- cGCGGCG-GCGggGUCGGguuUCUCCGg -3'
miRNA:   3'- -UGCUGCuUGCuuCAGUCug-GGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 30989 0.66 0.974094
Target:  5'- gGCGACG-GCGggGUCuucgccGGACgucgccgccgccuCCUCCGAg -3'
miRNA:   3'- -UGCUGCuUGCuuCAG------UCUG-------------GGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 60959 0.67 0.969001
Target:  5'- uCGACGAGCGccGGgccuacgcgcgccucCGGACCCUCCu- -3'
miRNA:   3'- uGCUGCUUGCu-UCa--------------GUCUGGGAGGuu -5'
10712 3' -53.3 NC_002794.1 + 158186 0.67 0.965558
Target:  5'- cGCGAUGggUGAgggGGUCGGAacaCCgCCAAc -3'
miRNA:   3'- -UGCUGCuuGCU---UCAGUCUg--GGaGGUU- -5'
10712 3' -53.3 NC_002794.1 + 96928 0.67 0.965558
Target:  5'- cCGGCGAcagcACGccGUCGGAgUCUCCGGa -3'
miRNA:   3'- uGCUGCU----UGCuuCAGUCUgGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 78392 0.67 0.958626
Target:  5'- gACGGCGAcgACGAGGccUCGccgcGACUCUCCGc -3'
miRNA:   3'- -UGCUGCU--UGCUUC--AGU----CUGGGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 122196 0.68 0.954825
Target:  5'- uGCGACGcGGCGAAG-CGGugCCggcgCCGc -3'
miRNA:   3'- -UGCUGC-UUGCUUCaGUCugGGa---GGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.