miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10712 3' -53.3 NC_002794.1 + 181335 1.06 0.010503
Target:  5'- aACGACGAACGAAGUCAGACCCUCCAAu -3'
miRNA:   3'- -UGCUGCUUGCUUCAGUCUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 181176 0.69 0.921619
Target:  5'- gACGGCGAACGg---CGGACaCUCCAAg -3'
miRNA:   3'- -UGCUGCUUGCuucaGUCUGgGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 180080 0.66 0.983385
Target:  5'- aGCGGCGGACGGuaucGGUgcgCAGGgCUUCCGu -3'
miRNA:   3'- -UGCUGCUUGCU----UCA---GUCUgGGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 179638 0.66 0.979233
Target:  5'- uGCGACGGAaaggaGAAGUCAGgcggGCUCgCCGGa -3'
miRNA:   3'- -UGCUGCUUg----CUUCAGUC----UGGGaGGUU- -5'
10712 3' -53.3 NC_002794.1 + 177717 0.66 0.985209
Target:  5'- uACGGCGGuccACGggG-CGGAUCCgaCCGAc -3'
miRNA:   3'- -UGCUGCU---UGCuuCaGUCUGGGa-GGUU- -5'
10712 3' -53.3 NC_002794.1 + 158186 0.67 0.965558
Target:  5'- cGCGAUGggUGAgggGGUCGGAacaCCgCCAAc -3'
miRNA:   3'- -UGCUGCuuGCU---UCAGUCUg--GGaGGUU- -5'
10712 3' -53.3 NC_002794.1 + 145894 0.66 0.985209
Target:  5'- aGCGGCGAGCGcgacggggGAGUC-GACCgCgCCGAg -3'
miRNA:   3'- -UGCUGCUUGC--------UUCAGuCUGG-GaGGUU- -5'
10712 3' -53.3 NC_002794.1 + 145617 0.69 0.934327
Target:  5'- cGCGACGAGgagcucggccCGGAGaUCGGACCCgagcucgucgucgggUCCGAu -3'
miRNA:   3'- -UGCUGCUU----------GCUUC-AGUCUGGG---------------AGGUU- -5'
10712 3' -53.3 NC_002794.1 + 145324 0.71 0.829601
Target:  5'- cGCGGCGGGCGgcGcUCGGGCCCgagcgggcCCGAg -3'
miRNA:   3'- -UGCUGCUUGCuuC-AGUCUGGGa-------GGUU- -5'
10712 3' -53.3 NC_002794.1 + 143827 0.74 0.677242
Target:  5'- cAUGGCGAGCGGccGGUCcGACgCCUCCGg -3'
miRNA:   3'- -UGCUGCUUGCU--UCAGuCUG-GGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 141877 0.66 0.974358
Target:  5'- uCGACGGACGAA---AGACuCCUCCc- -3'
miRNA:   3'- uGCUGCUUGCUUcagUCUG-GGAGGuu -5'
10712 3' -53.3 NC_002794.1 + 138732 0.71 0.846106
Target:  5'- cCGGCucGACGggGUCcccGGCCCUCCGGg -3'
miRNA:   3'- uGCUGc-UUGCuuCAGu--CUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 135676 0.69 0.921619
Target:  5'- cACGACGGGCaggGGAGUCGuGACggUCUCCAGg -3'
miRNA:   3'- -UGCUGCUUG---CUUCAGU-CUG--GGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 129950 0.66 0.974358
Target:  5'- gGCGGCGGcucUGGAGaccUCGGuCCCUCCGGu -3'
miRNA:   3'- -UGCUGCUu--GCUUC---AGUCuGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 122196 0.68 0.954825
Target:  5'- uGCGACGcGGCGAAG-CGGugCCggcgCCGc -3'
miRNA:   3'- -UGCUGC-UUGCUUCaGUCugGGa---GGUu -5'
10712 3' -53.3 NC_002794.1 + 121606 0.7 0.897358
Target:  5'- gGCGACGAuuuCGAAGUCAuccggcuggacGAgUCUCCGGg -3'
miRNA:   3'- -UGCUGCUu--GCUUCAGU-----------CUgGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 119982 0.69 0.909966
Target:  5'- uCGACGAGCGGAGccgCAG-CUCUUCGAc -3'
miRNA:   3'- uGCUGCUUGCUUCa--GUCuGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 117042 0.66 0.97689
Target:  5'- cCGACaGcACGAGGUaCGGGCCgUCCGu -3'
miRNA:   3'- uGCUG-CuUGCUUCA-GUCUGGgAGGUu -5'
10712 3' -53.3 NC_002794.1 + 110636 0.66 0.974358
Target:  5'- cGCGGCG-GCGggGUCGGguuUCUCCGg -3'
miRNA:   3'- -UGCUGCuUGCuuCAGUCug-GGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 109168 0.73 0.766548
Target:  5'- gGCGACGAgcggcgguagcgGCGGAGgcagCGGGUCCUCCAAa -3'
miRNA:   3'- -UGCUGCU------------UGCUUCa---GUCUGGGAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.