Results 1 - 20 of 440 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 181236 | 1.11 | 0.000798 |
Target: 5'- cCGGCGACGGCGCGCCUUCCACCGCGCg -3' miRNA: 3'- -GCCGCUGCCGCGCGGAAGGUGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 34339 | 0.86 | 0.044363 |
Target: 5'- aGGCGACGGcCGCGCCgUUCCGCC-CGCu -3' miRNA: 3'- gCCGCUGCC-GCGCGG-AAGGUGGcGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 54991 | 0.84 | 0.060041 |
Target: 5'- gCGGCGACGGCGgcgacuCGCCgggcgUCCGCCGcCGCg -3' miRNA: 3'- -GCCGCUGCCGC------GCGGa----AGGUGGC-GCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 67018 | 0.84 | 0.066373 |
Target: 5'- cCGGCGGCGGCG-GCCggcucCCGCCGCGUc -3' miRNA: 3'- -GCCGCUGCCGCgCGGaa---GGUGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 115928 | 0.83 | 0.077092 |
Target: 5'- gGcGCGGCGGCGgGCCggcCCGCCGCGUg -3' miRNA: 3'- gC-CGCUGCCGCgCGGaa-GGUGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 12230 | 0.83 | 0.079033 |
Target: 5'- gCGGCGcCGGCgGCGCCgUCCGCgGCGCc -3' miRNA: 3'- -GCCGCuGCCG-CGCGGaAGGUGgCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 186491 | 0.82 | 0.091694 |
Target: 5'- gGGCccGGCGGCGCGCCUccCCGCCGUGg -3' miRNA: 3'- gCCG--CUGCCGCGCGGAa-GGUGGCGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 102154 | 0.82 | 0.091694 |
Target: 5'- uCGGCGGCGuGCGCGCCggggCCAUcguggCGCGCg -3' miRNA: 3'- -GCCGCUGC-CGCGCGGaa--GGUG-----GCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 113178 | 0.82 | 0.089237 |
Target: 5'- gCGGCGGCGGUcgcggagGCGCC-UCCGCCGcCGCc -3' miRNA: 3'- -GCCGCUGCCG-------CGCGGaAGGUGGC-GCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 60640 | 0.82 | 0.087273 |
Target: 5'- cCGGCGcCGGCgGCGCCggCCACCcgGCGCg -3' miRNA: 3'- -GCCGCuGCCG-CGCGGaaGGUGG--CGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 151583 | 0.81 | 0.098725 |
Target: 5'- cCGGCGGC-GCGCGCCg-CCGCCGCGg -3' miRNA: 3'- -GCCGCUGcCGCGCGGaaGGUGGCGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 50773 | 0.8 | 0.117157 |
Target: 5'- gCGGCGACGGCGCGUCUcggGCgGCGCc -3' miRNA: 3'- -GCCGCUGCCGCGCGGAaggUGgCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 285 | 0.8 | 0.117157 |
Target: 5'- aCGGCGGCccuGGCGCGCCgaaCGCCGgGCc -3' miRNA: 3'- -GCCGCUG---CCGCGCGGaagGUGGCgCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 99597 | 0.8 | 0.120039 |
Target: 5'- gCGGCGGCGGCGCGCgcUCgCGCCGCc- -3' miRNA: 3'- -GCCGCUGCCGCGCGgaAG-GUGGCGcg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 108405 | 0.8 | 0.120039 |
Target: 5'- cCGGCGGCGGCGC-CCa-CCACgGCGCc -3' miRNA: 3'- -GCCGCUGCCGCGcGGaaGGUGgCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 51386 | 0.79 | 0.132238 |
Target: 5'- cCGGCGACaGGCGC-CCUccgggCuCACCGCGCa -3' miRNA: 3'- -GCCGCUG-CCGCGcGGAa----G-GUGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 124406 | 0.79 | 0.129085 |
Target: 5'- cCGGuCGuCGGgGCGCCgUCCGCCGCGg -3' miRNA: 3'- -GCC-GCuGCCgCGCGGaAGGUGGCGCg -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 52170 | 0.79 | 0.135462 |
Target: 5'- gCGGCGGCGGUGCGCa--UCGCCuGCGCc -3' miRNA: 3'- -GCCGCUGCCGCGCGgaaGGUGG-CGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 120089 | 0.79 | 0.145571 |
Target: 5'- gCGGCGACGacCGUGCCgagCgCGCCGCGCg -3' miRNA: 3'- -GCCGCUGCc-GCGCGGaa-G-GUGGCGCG- -5' |
|||||||
10713 | 3' | -62.7 | NC_002794.1 | + | 75351 | 0.78 | 0.156364 |
Target: 5'- cCGGCGACGGUuCGCCaccgacCCGCCGCGg -3' miRNA: 3'- -GCCGCUGCCGcGCGGaa----GGUGGCGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home