miRNA display CGI


Results 21 - 40 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 105909 0.78 0.152688
Target:  5'- gCGGCGGCGGCGCuaCcgCCGCCGC-Cg -3'
miRNA:   3'- -GCCGCUGCCGCGcgGaaGGUGGCGcG- -5'
10713 3' -62.7 NC_002794.1 + 180874 0.78 0.156364
Target:  5'- gCGGCGGaucCGGCGCGCCcggUCUcgGCCGCGg -3'
miRNA:   3'- -GCCGCU---GCCGCGCGGa--AGG--UGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 138440 0.78 0.156364
Target:  5'- gCGGUGGCGGCgGCGCCUcggCCugCGaCGUg -3'
miRNA:   3'- -GCCGCUGCCG-CGCGGAa--GGugGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 75351 0.78 0.156364
Target:  5'- cCGGCGACGGUuCGCCaccgacCCGCCGCGg -3'
miRNA:   3'- -GCCGCUGCCGcGCGGaa----GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 191526 0.78 0.160119
Target:  5'- gGGCGuCGGCccGCGCCUcCCGCCGCa- -3'
miRNA:   3'- gCCGCuGCCG--CGCGGAaGGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 37731 0.77 0.171879
Target:  5'- gCGaGCGGCGGCGcCGCCggCgGCgGCGCg -3'
miRNA:   3'- -GC-CGCUGCCGC-GCGGaaGgUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 186344 0.77 0.171879
Target:  5'- aCGGCGGCGGCGacguGCCcgaccagCCGCCGcCGCc -3'
miRNA:   3'- -GCCGCUGCCGCg---CGGaa-----GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 61518 0.77 0.175967
Target:  5'- cCGGaCGGCGGC-CGCCggcggCCGCCGCGa -3'
miRNA:   3'- -GCC-GCUGCCGcGCGGaa---GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 187836 0.77 0.184403
Target:  5'- uCGGCu-CGGCGCGCCgagggcucugCCcaGCCGCGCg -3'
miRNA:   3'- -GCCGcuGCCGCGCGGaa--------GG--UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 62091 0.77 0.188754
Target:  5'- aCGGCGacGCGGCGCGCCggacggUCUGgUGCGUg -3'
miRNA:   3'- -GCCGC--UGCCGCGCGGa-----AGGUgGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 61864 0.77 0.193194
Target:  5'- uGGaCGACGccGCGCGCCgucgUCggCGCCGCGCg -3'
miRNA:   3'- gCC-GCUGC--CGCGCGGa---AG--GUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 117392 0.77 0.193194
Target:  5'- gCGGCGAa-GCGgGCC-UCCACCGuCGCg -3'
miRNA:   3'- -GCCGCUgcCGCgCGGaAGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 91225 0.76 0.202351
Target:  5'- aCGGCgGACGGCGCGgCggCCgucggGCUGCGCu -3'
miRNA:   3'- -GCCG-CUGCCGCGCgGaaGG-----UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 30987 0.76 0.206593
Target:  5'- cCGGCGACGGCGgggucuuCGCCggacgUCGCCGcCGCc -3'
miRNA:   3'- -GCCGCUGCCGC-------GCGGaa---GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 112327 0.76 0.207069
Target:  5'- aCGGCGGgGaGCGCGCCggCCgGCgGCGCc -3'
miRNA:   3'- -GCCGCUgC-CGCGCGGaaGG-UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 19466 0.76 0.211882
Target:  5'- gCGGCGGCGGCGggaccCGCCggUCGCC-CGCa -3'
miRNA:   3'- -GCCGCUGCCGC-----GCGGaaGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 16541 0.76 0.211882
Target:  5'- cCGGCGucccCGGCGuCGCCaccgCCACCGcCGCc -3'
miRNA:   3'- -GCCGCu---GCCGC-GCGGaa--GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 190994 0.76 0.21679
Target:  5'- gCGGCGACGGCGuCGCgaUCgGCCGUuCg -3'
miRNA:   3'- -GCCGCUGCCGC-GCGgaAGgUGGCGcG- -5'
10713 3' -62.7 NC_002794.1 + 184580 0.76 0.21679
Target:  5'- gCGGCGGCGGCG-GCCacgcgCgGCCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCgCGGaa---GgUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 94004 0.76 0.221796
Target:  5'- cCGGCGccgGCGGCGgGCCggcgggUUCCGCCG-GCg -3'
miRNA:   3'- -GCCGC---UGCCGCgCGG------AAGGUGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.