miRNA display CGI


Results 1 - 20 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 195110 0.68 0.609239
Target:  5'- aCGGCGucucGUGCGCCcgCgGCgCGCGCg -3'
miRNA:   3'- -GCCGCugc-CGCGCGGaaGgUG-GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 194656 0.68 0.613045
Target:  5'- -uGCGuCGGCuGCGCCgggUCCcccuccgggugcgacACCGUGCc -3'
miRNA:   3'- gcCGCuGCCG-CGCGGa--AGG---------------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 194159 0.73 0.333675
Target:  5'- -cGCGAgcccugcCGGCGCGCCUUCuccguccgcacguuCACCGcCGCg -3'
miRNA:   3'- gcCGCU-------GCCGCGCGGAAG--------------GUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 194018 0.66 0.674874
Target:  5'- gCGGCcgccgccGcCGGCGCcucGCCcgCCGCCGcCGCc -3'
miRNA:   3'- -GCCG-------CuGCCGCG---CGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 193941 0.67 0.647336
Target:  5'- cCGGCucCGGCccCGCCg-CCACCGcCGCc -3'
miRNA:   3'- -GCCGcuGCCGc-GCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 193586 0.68 0.570437
Target:  5'- cCGGUGGCGGCucaccgucguguaGCGUa--CCGCgGCGCc -3'
miRNA:   3'- -GCCGCUGCCG-------------CGCGgaaGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 193281 0.68 0.599737
Target:  5'- -aGCGGCGuGCGCcgguagucGCCgUCCGcuCCGCGCc -3'
miRNA:   3'- gcCGCUGC-CGCG--------CGGaAGGU--GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 193003 0.66 0.67582
Target:  5'- cCGGCGugugcagcgccaGCGGCGUGUacaUCUGCUGcCGCa -3'
miRNA:   3'- -GCCGC------------UGCCGCGCGga-AGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 192666 0.66 0.685262
Target:  5'- uCGcGCGACucgaaGCGCCggCCGCCGuCGUa -3'
miRNA:   3'- -GC-CGCUGccg--CGCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 192635 0.74 0.277406
Target:  5'- gGGCGGCcGCuccaGCCgcgCCGCCGCGCg -3'
miRNA:   3'- gCCGCUGcCGcg--CGGaa-GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 192440 0.72 0.36405
Target:  5'- cCGGCG-CGucGCGCGCCUcgcagucgcgcgCCACCaGCGCc -3'
miRNA:   3'- -GCCGCuGC--CGCGCGGAa-----------GGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 192039 0.71 0.436976
Target:  5'- uGGCGGCGGCG-GCUgcugCUGCUGCuGCu -3'
miRNA:   3'- gCCGCUGCCGCgCGGaa--GGUGGCG-CG- -5'
10713 3' -62.7 NC_002794.1 + 191681 0.75 0.237406
Target:  5'- gCGGCGGCGGCGUGCCc-UCGUCGCGg -3'
miRNA:   3'- -GCCGCUGCCGCGCGGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 191526 0.78 0.160119
Target:  5'- gGGCGuCGGCccGCGCCUcCCGCCGCa- -3'
miRNA:   3'- gCCGCuGCCG--CGCGGAaGGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 191365 0.66 0.694666
Target:  5'- uCGGgGACGGgccggacccucCGCGCCcgCgGCCGCcCa -3'
miRNA:   3'- -GCCgCUGCC-----------GCGCGGaaGgUGGCGcG- -5'
10713 3' -62.7 NC_002794.1 + 190994 0.76 0.21679
Target:  5'- gCGGCGACGGCGuCGCgaUCgGCCGUuCg -3'
miRNA:   3'- -GCCGCUGCCGC-GCGgaAGgUGGCGcG- -5'
10713 3' -62.7 NC_002794.1 + 190646 0.67 0.65685
Target:  5'- cCGGCGugugcaggaucACGuCGCGC---CCGCCGCGCc -3'
miRNA:   3'- -GCCGC-----------UGCcGCGCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 190512 0.67 0.65685
Target:  5'- aCGGCGugcccaGCcGCGUGCCgaucgucgUCCACCaGCGg -3'
miRNA:   3'- -GCCGC------UGcCGCGCGGa-------AGGUGG-CGCg -5'
10713 3' -62.7 NC_002794.1 + 190160 0.74 0.289782
Target:  5'- uGGCGGCGGCuCuCCUcgaacacCCGCCGCGCc -3'
miRNA:   3'- gCCGCUGCCGcGcGGAa------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 189885 0.68 0.561991
Target:  5'- cCGGCccgcucgGGCcCGCCgucagcgCCGCCGCGCg -3'
miRNA:   3'- -GCCGcug----CCGcGCGGaa-----GGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.