miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 103789 0.73 0.694866
Target:  5'- cGGCGGcugAGCuUGAGGUGCGCCuGCGAcgGCg -3'
miRNA:   3'- cUUGCU---UCG-GCUCCAUGCGG-CGCU--UG- -5'
10713 5' -54.7 NC_002794.1 + 64785 0.73 0.704831
Target:  5'- aGACGAcGCCGGuuccgcGGcgagcgACGCCGCGGACg -3'
miRNA:   3'- cUUGCUuCGGCU------CCa-----UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 10321 0.73 0.704831
Target:  5'- cGACGAcucGGCCGucGUcgGCGCCGCGAc- -3'
miRNA:   3'- cUUGCU---UCGGCucCA--UGCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 14631 0.73 0.7088
Target:  5'- aGACGggGCCGGGcacggagacgccgGCGCCGCGGc- -3'
miRNA:   3'- cUUGCuuCGGCUCca-----------UGCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 137776 0.72 0.713748
Target:  5'- aGGAUGggGUCGAGGUGCaggucgcugaggaGCCGCaGGAa -3'
miRNA:   3'- -CUUGCuuCGGCUCCAUG-------------CGGCG-CUUg -5'
10713 5' -54.7 NC_002794.1 + 42663 0.72 0.713748
Target:  5'- cGACGgcGCCGccggcacgGGGUACGCCgagaccgGCGAGCc -3'
miRNA:   3'- cUUGCuuCGGC--------UCCAUGCGG-------CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 107224 0.72 0.714735
Target:  5'- cGGGCGgcGCgcgaCGGGGgcgGCGUCGCGGACc -3'
miRNA:   3'- -CUUGCuuCG----GCUCCa--UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 186794 0.72 0.72457
Target:  5'- -cGCGAAGCCGcGGUACGCCuccGCcgucaucgucacGAACg -3'
miRNA:   3'- cuUGCUUCGGCuCCAUGCGG---CG------------CUUG- -5'
10713 5' -54.7 NC_002794.1 + 50653 0.72 0.72457
Target:  5'- uGAGCGAaaacauggcGGCCGcGGcgcuCGCCGCGAAUc -3'
miRNA:   3'- -CUUGCU---------UCGGCuCCau--GCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 187492 0.72 0.734327
Target:  5'- aGGACGAGGCCGcgcAGGcggccaggGCGCcCGCGGAg -3'
miRNA:   3'- -CUUGCUUCGGC---UCCa-------UGCG-GCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 95835 0.72 0.743033
Target:  5'- gGAGCGGcggcggcGGCCGGGG-AgGCgGCGGGCg -3'
miRNA:   3'- -CUUGCU-------UCGGCUCCaUgCGgCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 82710 0.72 0.743996
Target:  5'- aGACGc-GCCGAGG-ACGCCGCGc-- -3'
miRNA:   3'- cUUGCuuCGGCUCCaUGCGGCGCuug -5'
10713 5' -54.7 NC_002794.1 + 125731 0.72 0.743996
Target:  5'- gGGAgGAGGCgGAGGcGgGCCGCGGGa -3'
miRNA:   3'- -CUUgCUUCGgCUCCaUgCGGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 13102 0.72 0.743996
Target:  5'- gGGACGAGGUgcguucggCGGGGU-CGCCGCGcGGCu -3'
miRNA:   3'- -CUUGCUUCG--------GCUCCAuGCGGCGC-UUG- -5'
10713 5' -54.7 NC_002794.1 + 107093 0.72 0.753569
Target:  5'- cGACG-GGCgGGGGUGuguCGCUGCGAGCc -3'
miRNA:   3'- cUUGCuUCGgCUCCAU---GCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 137378 0.72 0.753569
Target:  5'- cGGGCGAGcGCCGAcgcgGGUccggucuguccgGCGuCCGCGGACg -3'
miRNA:   3'- -CUUGCUU-CGGCU----CCA------------UGC-GGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 66514 0.72 0.766793
Target:  5'- cGAGCGAuaGGCCGuccccggguccgcgaAGGUcgGCGCCgGCGGAUa -3'
miRNA:   3'- -CUUGCU--UCGGC---------------UCCA--UGCGG-CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 117926 0.71 0.772391
Target:  5'- uGAACGuc-CCGAGGUccAgGUCGCGGACg -3'
miRNA:   3'- -CUUGCuucGGCUCCA--UgCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 105868 0.71 0.772391
Target:  5'- uGAGCGgcGCCGAGG-ACGUgGgGggUg -3'
miRNA:   3'- -CUUGCuuCGGCUCCaUGCGgCgCuuG- -5'
10713 5' -54.7 NC_002794.1 + 46324 0.71 0.790721
Target:  5'- cGACGgcGCCGu----CGCCGCGGACg -3'
miRNA:   3'- cUUGCuuCGGCuccauGCGGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.