miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 192404 0.68 0.899244
Target:  5'- ------cGCCGGGGUagucgaaACGCCGCGAc- -3'
miRNA:   3'- cuugcuuCGGCUCCA-------UGCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 189856 0.66 0.955724
Target:  5'- -cGCGGAGCCGucGGcgucguCGCCGCcGACc -3'
miRNA:   3'- cuUGCUUCGGCu-CCau----GCGGCGcUUG- -5'
10713 5' -54.7 NC_002794.1 + 188266 0.68 0.906123
Target:  5'- uAGCGGcgGGCCG-GGUagcggaugcaggGCGCCGCGcGCc -3'
miRNA:   3'- cUUGCU--UCGGCuCCA------------UGCGGCGCuUG- -5'
10713 5' -54.7 NC_002794.1 + 187492 0.72 0.734327
Target:  5'- aGGACGAGGCCGcgcAGGcggccaggGCGCcCGCGGAg -3'
miRNA:   3'- -CUUGCUUCGGC---UCCa-------UGCG-GCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 186794 0.72 0.72457
Target:  5'- -cGCGAAGCCGcGGUACGCCuccGCcgucaucgucacGAACg -3'
miRNA:   3'- cuUGCUUCGGCuCCAUGCGG---CG------------CUUG- -5'
10713 5' -54.7 NC_002794.1 + 185363 0.78 0.413362
Target:  5'- cGAGCG-GGCCGA---ACGCCGCGAGCg -3'
miRNA:   3'- -CUUGCuUCGGCUccaUGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 185266 0.68 0.899881
Target:  5'- cGGACGccgccGGCCGA-GUGgGCCGcCGGACa -3'
miRNA:   3'- -CUUGCu----UCGGCUcCAUgCGGC-GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 184478 0.69 0.8798
Target:  5'- cGAACGgcGCgCGGGGccccggACGCC-CGGGCg -3'
miRNA:   3'- -CUUGCuuCG-GCUCCa-----UGCGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 183593 0.74 0.644442
Target:  5'- cGGugGggGCgGAGGgGgGCCGCGcGCg -3'
miRNA:   3'- -CUugCuuCGgCUCCaUgCGGCGCuUG- -5'
10713 5' -54.7 NC_002794.1 + 182984 0.68 0.923456
Target:  5'- cGAGcCGAcGGCCGGcGcuuCGCCGCGGGCg -3'
miRNA:   3'- -CUU-GCU-UCGGCUcCau-GCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 182498 0.68 0.906123
Target:  5'- ---aGggGCCGgucAGGUACGCguaGCGGAg -3'
miRNA:   3'- cuugCuuCGGC---UCCAUGCGg--CGCUUg -5'
10713 5' -54.7 NC_002794.1 + 181270 1.1 0.004032
Target:  5'- cGAACGAAGCCGAGGUACGCCGCGAACa -3'
miRNA:   3'- -CUUGCUUCGGCUCCAUGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 180365 0.7 0.833941
Target:  5'- aGGACGAccGGCgCGAGG-ACGCUGCcGGCc -3'
miRNA:   3'- -CUUGCU--UCG-GCUCCaUGCGGCGcUUG- -5'
10713 5' -54.7 NC_002794.1 + 179916 0.68 0.906123
Target:  5'- gGAGCGGcuCCGAcGGUuucgaagacgACGUCGCGGGCc -3'
miRNA:   3'- -CUUGCUucGGCU-CCA----------UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 179599 0.67 0.951804
Target:  5'- ---aGAucacGUCGAGGaGCGgCGCGAGCg -3'
miRNA:   3'- cuugCUu---CGGCUCCaUGCgGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 158543 0.68 0.928765
Target:  5'- aGGACGcGGCCGAGaucGUcuaACGCCGCucuguaacgaaaGAACg -3'
miRNA:   3'- -CUUGCuUCGGCUC---CA---UGCGGCG------------CUUG- -5'
10713 5' -54.7 NC_002794.1 + 155921 0.69 0.865323
Target:  5'- -uGCGGAGCCG-GGUGCuuGCCGUcaccgGGGCu -3'
miRNA:   3'- cuUGCUUCGGCuCCAUG--CGGCG-----CUUG- -5'
10713 5' -54.7 NC_002794.1 + 153425 0.68 0.923456
Target:  5'- -cGCGGAGCCGAGcUGgGC-GUGGACg -3'
miRNA:   3'- cuUGCUUCGGCUCcAUgCGgCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 150095 0.74 0.644442
Target:  5'- uGGGCGGAGCgUGAGGccggaGCGCCGCucGAACa -3'
miRNA:   3'- -CUUGCUUCG-GCUCCa----UGCGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 149961 0.69 0.8798
Target:  5'- gGGACGuGGCCGAcc--UGCCGCGGACc -3'
miRNA:   3'- -CUUGCuUCGGCUccauGCGGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.