miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 5' -60.7 NC_002794.1 + 195121 0.68 0.662553
Target:  5'- uGCGCCcGCGGCGcGCG-CGGGCucGCg -3'
miRNA:   3'- gCGCGGcUGCCGCuUGCcGCCUG--UGa -5'
10714 5' -60.7 NC_002794.1 + 194938 0.69 0.624008
Target:  5'- aGCuCCGACGGCGAcgucgucaGCaGCGG-CACg -3'
miRNA:   3'- gCGcGGCUGCCGCU--------UGcCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 193822 0.74 0.359481
Target:  5'- gGCGCCGAC-GCGucGCGGCGccGGCACUu -3'
miRNA:   3'- gCGCGGCUGcCGCu-UGCCGC--CUGUGA- -5'
10714 5' -60.7 NC_002794.1 + 192145 0.66 0.77418
Target:  5'- uGCuGCCGGC-GCGGucGCGGCGGAg--- -3'
miRNA:   3'- gCG-CGGCUGcCGCU--UGCCGCCUguga -5'
10714 5' -60.7 NC_002794.1 + 191986 0.68 0.680767
Target:  5'- gGCuccuCCGACGGcCGGgacgguaGCGGCGGugGCc -3'
miRNA:   3'- gCGc---GGCUGCC-GCU-------UGCCGCCugUGa -5'
10714 5' -60.7 NC_002794.1 + 191871 0.79 0.179322
Target:  5'- --gGCCGGCGGCGGaggggGCGGCGGAgGCg -3'
miRNA:   3'- gcgCGGCUGCCGCU-----UGCCGCCUgUGa -5'
10714 5' -60.7 NC_002794.1 + 191671 0.71 0.492195
Target:  5'- gGCGCCGGCaGCG-GCGGCGG-CGu- -3'
miRNA:   3'- gCGCGGCUGcCGCuUGCCGCCuGUga -5'
10714 5' -60.7 NC_002794.1 + 190992 0.66 0.782932
Target:  5'- gCGCGgCGACGGCGucgcgauCGGCcguucgaucGGCACg -3'
miRNA:   3'- -GCGCgGCUGCCGCuu-----GCCGc--------CUGUGa -5'
10714 5' -60.7 NC_002794.1 + 190738 0.72 0.43955
Target:  5'- aGCGCCcgccgccgucucGACGG-GGGCGGCGGcCGCg -3'
miRNA:   3'- gCGCGG------------CUGCCgCUUGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 188354 0.66 0.77418
Target:  5'- uCGCGcCCGucCGGCcGGCGGCGGcCGa- -3'
miRNA:   3'- -GCGC-GGCu-GCCGcUUGCCGCCuGUga -5'
10714 5' -60.7 NC_002794.1 + 188252 0.79 0.170994
Target:  5'- gGCGgCGGCGGCGGuaGCGGCGGGC-Cg -3'
miRNA:   3'- gCGCgGCUGCCGCU--UGCCGCCUGuGa -5'
10714 5' -60.7 NC_002794.1 + 187445 0.67 0.754539
Target:  5'- cCGCGCCGucugccgccgcuCGGCGucgcuCGGCGcGCGCc -3'
miRNA:   3'- -GCGCGGCu-----------GCCGCuu---GCCGCcUGUGa -5'
10714 5' -60.7 NC_002794.1 + 186839 0.67 0.765315
Target:  5'- gGCGcCCGACaGCGc---GCGGGCGCUg -3'
miRNA:   3'- gCGC-GGCUGcCGCuugcCGCCUGUGA- -5'
10714 5' -60.7 NC_002794.1 + 185625 0.66 0.790707
Target:  5'- aGCGaCGGCGaGCGAgacucgaGCGGCGGAa--- -3'
miRNA:   3'- gCGCgGCUGC-CGCU-------UGCCGCCUguga -5'
10714 5' -60.7 NC_002794.1 + 185468 0.68 0.691257
Target:  5'- aCGcCGCgGGCGGCGGccGCGGCgaggGGAC-Cg -3'
miRNA:   3'- -GC-GCGgCUGCCGCU--UGCCG----CCUGuGa -5'
10714 5' -60.7 NC_002794.1 + 185231 0.69 0.642332
Target:  5'- uCGCGCCGACcgccGCGcACGagagaaagcgccaGCGGACGCc -3'
miRNA:   3'- -GCGCGGCUGc---CGCuUGC-------------CGCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 184646 0.66 0.800069
Target:  5'- uCGCGUCGGCGGCGuagcAACGGCu------ -3'
miRNA:   3'- -GCGCGGCUGCCGC----UUGCCGccuguga -5'
10714 5' -60.7 NC_002794.1 + 184570 0.82 0.113156
Target:  5'- aCGCGCCGccGCGGCG-GCGGCGGcCACg -3'
miRNA:   3'- -GCGCGGC--UGCCGCuUGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 184473 0.69 0.652932
Target:  5'- cCGCGCgaACGGCGcGCGGggcccCGGACGCc -3'
miRNA:   3'- -GCGCGgcUGCCGCuUGCC-----GCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 184077 0.72 0.465486
Target:  5'- aCGCGCCcacgguguaGCGGCaGAACGGCGaACGCg -3'
miRNA:   3'- -GCGCGGc--------UGCCG-CUUGCCGCcUGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.