miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10716 3' -56.4 NC_002794.1 + 87265 0.66 0.942241
Target:  5'- gGGUGGgGGUGcagGCCGGgcgggugGGGGuGGGg -3'
miRNA:   3'- aCCGCUgCUACa--UGGCCa------CUCCuCCU- -5'
10716 3' -56.4 NC_002794.1 + 32579 0.66 0.942241
Target:  5'- cGcGCGGCGGUGccgggGCCGGggccGGGGccGGGGc -3'
miRNA:   3'- aC-CGCUGCUACa----UGGCCa---CUCC--UCCU- -5'
10716 3' -56.4 NC_002794.1 + 95890 0.66 0.942241
Target:  5'- cGGCGGCGAgGgcgcacgACgUGGUGcGGGAGGu -3'
miRNA:   3'- aCCGCUGCUaCa------UG-GCCAC-UCCUCCu -5'
10716 3' -56.4 NC_002794.1 + 55277 0.66 0.937658
Target:  5'- gGGCGGCGGUGg--CGGcGAcGAGGGc -3'
miRNA:   3'- aCCGCUGCUACaugGCCaCUcCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 102188 0.66 0.937658
Target:  5'- cGGCGAgGAccUGgcgGCCGccGUGAcGGAGGc -3'
miRNA:   3'- aCCGCUgCU--ACa--UGGC--CACU-CCUCCu -5'
10716 3' -56.4 NC_002794.1 + 100456 0.66 0.932849
Target:  5'- cGGCGGCGgcGccuucCCGGUGGcGGAGa- -3'
miRNA:   3'- aCCGCUGCuaCau---GGCCACU-CCUCcu -5'
10716 3' -56.4 NC_002794.1 + 114763 0.66 0.932849
Target:  5'- cGGCGcCGGUccucGgCGGcGAGGAGGAa -3'
miRNA:   3'- aCCGCuGCUAca--UgGCCaCUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 44721 0.66 0.92255
Target:  5'- cGGCGACGucg-GCCGGcGccgccGGAGGGc -3'
miRNA:   3'- aCCGCUGCuacaUGGCCaCu----CCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 44245 0.67 0.913656
Target:  5'- gGGCGGCucgGUGCCGGgcggcucggccgccGGGGAcGGAg -3'
miRNA:   3'- aCCGCUGcuaCAUGGCCa-------------CUCCU-CCU- -5'
10716 3' -56.4 NC_002794.1 + 125690 0.67 0.910758
Target:  5'- gGGCGACG-UGUugCugcgcgugacGGUGgagcggagcgaacGGGAGGAg -3'
miRNA:   3'- aCCGCUGCuACAugG----------CCAC-------------UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 143225 0.67 0.904793
Target:  5'- gUGGCggaaccacaggaaGACGGUGUcguCgUGGUGcAGGAGGAa -3'
miRNA:   3'- -ACCG-------------CUGCUACAu--G-GCCAC-UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 107621 0.67 0.892848
Target:  5'- cGGgGACGGUGg--CGGUGAcgaaGAGGAg -3'
miRNA:   3'- aCCgCUGCUACaugGCCACUc---CUCCU- -5'
10716 3' -56.4 NC_002794.1 + 42964 0.67 0.892848
Target:  5'- cGGCGugGAUGUaggccaGCUGGUGcgccAGGAu -3'
miRNA:   3'- aCCGCugCUACA------UGGCCACucc-UCCU- -5'
10716 3' -56.4 NC_002794.1 + 177900 0.67 0.886244
Target:  5'- cGcGCGGuCGGUuUAUCGGgGAGGAGGGu -3'
miRNA:   3'- aC-CGCU-GCUAcAUGGCCaCUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 5809 0.68 0.879427
Target:  5'- cGGUGA-GAcc--CCGGUGGGGGGGGg -3'
miRNA:   3'- aCCGCUgCUacauGGCCACUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 18821 0.68 0.879427
Target:  5'- cGGCGACcucg-GCCGGcGcGGAGGAg -3'
miRNA:   3'- aCCGCUGcuacaUGGCCaCuCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 139633 0.68 0.8724
Target:  5'- gUGGCGAagcccaCGGUGcaGCUGGUGuaguacAGGAGGGa -3'
miRNA:   3'- -ACCGCU------GCUACa-UGGCCAC------UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 116018 0.68 0.8724
Target:  5'- cGGUGGCGAuUGgcgcggggACCGGaGAGGAGa- -3'
miRNA:   3'- aCCGCUGCU-ACa-------UGGCCaCUCCUCcu -5'
10716 3' -56.4 NC_002794.1 + 50588 0.68 0.865168
Target:  5'- cGGCGGCugGGUG-GCCGGcGccGGGGGGAu -3'
miRNA:   3'- aCCGCUG--CUACaUGGCCaC--UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 87004 0.68 0.857737
Target:  5'- cGGCGGCGuggGUuCCGGcGAGGguccgcAGGAu -3'
miRNA:   3'- aCCGCUGCua-CAuGGCCaCUCC------UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.