miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10717 5' -52 NC_002794.1 + 96919 0.66 0.99539
Target:  5'- gCGGAGgcgCcggcgacagcacgccGUCGGAGUCuCCGgAGACCu -3'
miRNA:   3'- -GCCUCa--G---------------UAGUCUUAGuGGC-UCUGGc -5'
10717 5' -52 NC_002794.1 + 177873 0.66 0.995107
Target:  5'- aCGGAG--AUCGGAacgGUUAUCaGAGACCGc -3'
miRNA:   3'- -GCCUCagUAGUCU---UAGUGG-CUCUGGC- -5'
10717 5' -52 NC_002794.1 + 10328 0.66 0.995107
Target:  5'- uCGGccGUCGUCGG---CGCCGcGACCGg -3'
miRNA:   3'- -GCCu-CAGUAGUCuuaGUGGCuCUGGC- -5'
10717 5' -52 NC_002794.1 + 148125 0.66 0.994339
Target:  5'- uCGGuGUCGggcgCGGGGcCGCCGGGGCg- -3'
miRNA:   3'- -GCCuCAGUa---GUCUUaGUGGCUCUGgc -5'
10717 5' -52 NC_002794.1 + 157035 0.66 0.994339
Target:  5'- uCGuuGUCuuUCAGAGUcCGgCGAGACCGu -3'
miRNA:   3'- -GCcuCAGu-AGUCUUA-GUgGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 129788 0.66 0.994339
Target:  5'- aCGGcGUCGcCGGAAuUCGCUGucGGACCGc -3'
miRNA:   3'- -GCCuCAGUaGUCUU-AGUGGC--UCUGGC- -5'
10717 5' -52 NC_002794.1 + 141977 0.66 0.99251
Target:  5'- -cGAGUCG-CAGGcgCA-CGGGACCGa -3'
miRNA:   3'- gcCUCAGUaGUCUuaGUgGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 141434 0.66 0.99251
Target:  5'- gCGGGGgCGcCGGGggCGCCGGGAgCGg -3'
miRNA:   3'- -GCCUCaGUaGUCUuaGUGGCUCUgGC- -5'
10717 5' -52 NC_002794.1 + 35101 0.67 0.991434
Target:  5'- uGGA--CGUCAGcGUgACCGAGaACCGg -3'
miRNA:   3'- gCCUcaGUAGUCuUAgUGGCUC-UGGC- -5'
10717 5' -52 NC_002794.1 + 149878 0.67 0.991434
Target:  5'- uCGGGGg-GUCuGggUCAUCGuGACCc -3'
miRNA:   3'- -GCCUCagUAGuCuuAGUGGCuCUGGc -5'
10717 5' -52 NC_002794.1 + 127624 0.67 0.991434
Target:  5'- cCGGAcUCGUCGucGaCGCCGAcGACCGa -3'
miRNA:   3'- -GCCUcAGUAGUcuUaGUGGCU-CUGGC- -5'
10717 5' -52 NC_002794.1 + 42465 0.67 0.991434
Target:  5'- uGGcGUCGUCcauGucgcgcgCGCCGGGGCCGa -3'
miRNA:   3'- gCCuCAGUAGu--Cuua----GUGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 130036 0.67 0.991434
Target:  5'- aGGAGcgucCGUCAucGUCGCCGucACCGg -3'
miRNA:   3'- gCCUCa---GUAGUcuUAGUGGCucUGGC- -5'
10717 5' -52 NC_002794.1 + 149021 0.67 0.991434
Target:  5'- cCGG-GUCAUCc---UCACCGAcucGGCCGg -3'
miRNA:   3'- -GCCuCAGUAGucuuAGUGGCU---CUGGC- -5'
10717 5' -52 NC_002794.1 + 124465 0.67 0.99024
Target:  5'- ---cGUCGUCGGcGUCGCCGccgcacgcccGGACCGc -3'
miRNA:   3'- gccuCAGUAGUCuUAGUGGC----------UCUGGC- -5'
10717 5' -52 NC_002794.1 + 59106 0.67 0.988919
Target:  5'- cCGcGAGcccuUCGUCGcGGcCACCGAGGCCGa -3'
miRNA:   3'- -GC-CUC----AGUAGUcUUaGUGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 86810 0.67 0.988919
Target:  5'- aGGGGagAUcCAGGGccgcgaccUCGCCGGGAUCGg -3'
miRNA:   3'- gCCUCagUA-GUCUU--------AGUGGCUCUGGC- -5'
10717 5' -52 NC_002794.1 + 137780 0.67 0.987463
Target:  5'- uGGGGUCGaggugCAG-GUCGCUGAGgaGCCGc -3'
miRNA:   3'- gCCUCAGUa----GUCuUAGUGGCUC--UGGC- -5'
10717 5' -52 NC_002794.1 + 103832 0.67 0.987463
Target:  5'- uGGAGUCG-CAGGccuugacCACCGAGcggGCCGc -3'
miRNA:   3'- gCCUCAGUaGUCUua-----GUGGCUC---UGGC- -5'
10717 5' -52 NC_002794.1 + 98227 0.67 0.985354
Target:  5'- cCGGgauuacgucaaccaGGcCAUCGGccacAUCGCCGAGGCCu -3'
miRNA:   3'- -GCC--------------UCaGUAGUCu---UAGUGGCUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.