miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1076 3' -49.1 NC_000929.1 + 13986 1.16 0.001014
Target:  5'- gCCAUCACGCCUGACUUACGCAAACGCg -3'
miRNA:   3'- -GGUAGUGCGGACUGAAUGCGUUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 28837 0.76 0.409576
Target:  5'- gCGUCguguGCGCCUGauGCUUGCGC--GCGCu -3'
miRNA:   3'- gGUAG----UGCGGAC--UGAAUGCGuuUGCG- -5'
1076 3' -49.1 NC_000929.1 + 5243 0.74 0.493429
Target:  5'- gCCAUUGCGUCUGGCgaUGCGUuuAACGUg -3'
miRNA:   3'- -GGUAGUGCGGACUGa-AUGCGu-UUGCG- -5'
1076 3' -49.1 NC_000929.1 + 13710 0.73 0.561128
Target:  5'- gCCAUCACGCCaGGCUUuuucCGCuuccGGCGa -3'
miRNA:   3'- -GGUAGUGCGGaCUGAAu---GCGu---UUGCg -5'
1076 3' -49.1 NC_000929.1 + 12344 0.72 0.635806
Target:  5'- uCCAUCACGCCUccugucaugcacgggGACgaggACGCuugacaccggcAACGCg -3'
miRNA:   3'- -GGUAGUGCGGA---------------CUGaa--UGCGu----------UUGCG- -5'
1076 3' -49.1 NC_000929.1 + 18279 0.71 0.689542
Target:  5'- aUCAgCACGuCCUGGUUgagcGCGCGAACGCc -3'
miRNA:   3'- -GGUaGUGC-GGACUGAa---UGCGUUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 31037 0.71 0.701093
Target:  5'- -aAUCACGUCgcugaUGGCcUGCGCcAGCGCa -3'
miRNA:   3'- ggUAGUGCGG-----ACUGaAUGCGuUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 18296 0.7 0.72395
Target:  5'- cUCGUCGCGgCUGGCUgguuuaACGCcgaugAAAUGCa -3'
miRNA:   3'- -GGUAGUGCgGACUGAa-----UGCG-----UUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 16256 0.7 0.757424
Target:  5'- uCCAUC-CGggUGGCUUugGCAAcgguaaagGCGCg -3'
miRNA:   3'- -GGUAGuGCggACUGAAugCGUU--------UGCG- -5'
1076 3' -49.1 NC_000929.1 + 31273 0.69 0.789588
Target:  5'- uCCGUCA-GCCUGACgguaaaacCGUAcuGCGCa -3'
miRNA:   3'- -GGUAGUgCGGACUGaau-----GCGUu-UGCG- -5'
1076 3' -49.1 NC_000929.1 + 8532 0.69 0.810121
Target:  5'- --uUCAgCGCCUGAC---CGCgAAACGCa -3'
miRNA:   3'- gguAGU-GCGGACUGaauGCG-UUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 27073 0.69 0.810121
Target:  5'- aCGUCAUG-CUGGCagcgGCGCAGACa- -3'
miRNA:   3'- gGUAGUGCgGACUGaa--UGCGUUUGcg -5'
1076 3' -49.1 NC_000929.1 + 13752 0.68 0.83742
Target:  5'- uCUGUCACGCgugCUGAUUgaagccgccaugACGCcAGCGCg -3'
miRNA:   3'- -GGUAGUGCG---GACUGAa-----------UGCGuUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 13082 0.68 0.848545
Target:  5'- gUCGUaCugGCCUGACguggGCcgaaGCAGGcCGCa -3'
miRNA:   3'- -GGUA-GugCGGACUGaa--UG----CGUUU-GCG- -5'
1076 3' -49.1 NC_000929.1 + 21881 0.68 0.857533
Target:  5'- uCCAUgCugGCaCUGAUg---GCAGAUGCa -3'
miRNA:   3'- -GGUA-GugCG-GACUGaaugCGUUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 18654 0.67 0.874697
Target:  5'- aCCGUCACcCCaaGAC--GCGCAAGCaGCu -3'
miRNA:   3'- -GGUAGUGcGGa-CUGaaUGCGUUUG-CG- -5'
1076 3' -49.1 NC_000929.1 + 36364 0.67 0.874697
Target:  5'- --uUCgACGCCUGAUacacaACGCcuGCGCg -3'
miRNA:   3'- gguAG-UGCGGACUGaa---UGCGuuUGCG- -5'
1076 3' -49.1 NC_000929.1 + 33408 0.67 0.882855
Target:  5'- uCCGUCGCcauauucaGCCUGACa-GCGCGuuccAGCGg -3'
miRNA:   3'- -GGUAGUG--------CGGACUGaaUGCGU----UUGCg -5'
1076 3' -49.1 NC_000929.1 + 14656 0.67 0.89072
Target:  5'- -uGUgACGCCgaaccgGGCc-GCGCAGAUGCu -3'
miRNA:   3'- ggUAgUGCGGa-----CUGaaUGCGUUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 29614 0.67 0.898287
Target:  5'- ---cCACGCCgGAU--ACGCugGAACGCg -3'
miRNA:   3'- gguaGUGCGGaCUGaaUGCG--UUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.