miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1076 3' -49.1 NC_000929.1 + 36364 0.67 0.874697
Target:  5'- --uUCgACGCCUGAUacacaACGCcuGCGCg -3'
miRNA:   3'- gguAG-UGCGGACUGaa---UGCGuuUGCG- -5'
1076 3' -49.1 NC_000929.1 + 16256 0.7 0.757424
Target:  5'- uCCAUC-CGggUGGCUUugGCAAcgguaaagGCGCg -3'
miRNA:   3'- -GGUAGuGCggACUGAAugCGUU--------UGCG- -5'
1076 3' -49.1 NC_000929.1 + 31037 0.71 0.701093
Target:  5'- -aAUCACGUCgcugaUGGCcUGCGCcAGCGCa -3'
miRNA:   3'- ggUAGUGCGG-----ACUGaAUGCGuUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 18279 0.71 0.689542
Target:  5'- aUCAgCACGuCCUGGUUgagcGCGCGAACGCc -3'
miRNA:   3'- -GGUaGUGC-GGACUGAa---UGCGUUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 12344 0.72 0.635806
Target:  5'- uCCAUCACGCCUccugucaugcacgggGACgaggACGCuugacaccggcAACGCg -3'
miRNA:   3'- -GGUAGUGCGGA---------------CUGaa--UGCGu----------UUGCG- -5'
1076 3' -49.1 NC_000929.1 + 13710 0.73 0.561128
Target:  5'- gCCAUCACGCCaGGCUUuuucCGCuuccGGCGa -3'
miRNA:   3'- -GGUAGUGCGGaCUGAAu---GCGu---UUGCg -5'
1076 3' -49.1 NC_000929.1 + 15344 0.66 0.931493
Target:  5'- uCCAUCACgGCCUGcaucagcgugGCUUucuCGCGGuuCGUu -3'
miRNA:   3'- -GGUAGUG-CGGAC----------UGAAu--GCGUUu-GCG- -5'
1076 3' -49.1 NC_000929.1 + 12788 0.66 0.930906
Target:  5'- --cUCGCGCCgguggcugGACaUUGCGUggauuccAGACGCu -3'
miRNA:   3'- gguAGUGCGGa-------CUG-AAUGCG-------UUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 4404 0.66 0.924237
Target:  5'- uCCcgCGCGCCUGuaaccaguucUGCGCAucCGUu -3'
miRNA:   3'- -GGuaGUGCGGACuga-------AUGCGUuuGCG- -5'
1076 3' -49.1 NC_000929.1 + 22557 0.67 0.90555
Target:  5'- gUCAUUACGgCUGAC--AC-CAAACGUg -3'
miRNA:   3'- -GGUAGUGCgGACUGaaUGcGUUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 18654 0.67 0.874697
Target:  5'- aCCGUCACcCCaaGAC--GCGCAAGCaGCu -3'
miRNA:   3'- -GGUAGUGcGGa-CUGaaUGCGUUUG-CG- -5'
1076 3' -49.1 NC_000929.1 + 33408 0.67 0.882855
Target:  5'- uCCGUCGCcauauucaGCCUGACa-GCGCGuuccAGCGg -3'
miRNA:   3'- -GGUAGUG--------CGGACUGaaUGCGU----UUGCg -5'
1076 3' -49.1 NC_000929.1 + 24579 0.66 0.925478
Target:  5'- uCCGUCAUGCCgaaGcCUUuCGaCGAACGg -3'
miRNA:   3'- -GGUAGUGCGGa--CuGAAuGC-GUUUGCg -5'
1076 3' -49.1 NC_000929.1 + 31273 0.69 0.789588
Target:  5'- uCCGUCA-GCCUGACgguaaaacCGUAcuGCGCa -3'
miRNA:   3'- -GGUAGUgCGGACUGaau-----GCGUu-UGCG- -5'
1076 3' -49.1 NC_000929.1 + 5904 0.66 0.925478
Target:  5'- gCAUCACGUCUGGaa-ACGgAAAUGa -3'
miRNA:   3'- gGUAGUGCGGACUgaaUGCgUUUGCg -5'
1076 3' -49.1 NC_000929.1 + 27995 0.66 0.919148
Target:  5'- -gAUUGCGCgUGACcugUGCGCuccuuAugGCg -3'
miRNA:   3'- ggUAGUGCGgACUGa--AUGCGu----UugCG- -5'
1076 3' -49.1 NC_000929.1 + 25318 0.67 0.90555
Target:  5'- gCCAUgACGUCUGAg--ACGCuguUGCa -3'
miRNA:   3'- -GGUAgUGCGGACUgaaUGCGuuuGCG- -5'
1076 3' -49.1 NC_000929.1 + 6703 0.67 0.90555
Target:  5'- aCCAUCccCGCgCUGGCaaaagaguUUGCGaCGGGCGUg -3'
miRNA:   3'- -GGUAGu-GCG-GACUG--------AAUGC-GUUUGCG- -5'
1076 3' -49.1 NC_000929.1 + 5243 0.74 0.493429
Target:  5'- gCCAUUGCGUCUGGCgaUGCGUuuAACGUg -3'
miRNA:   3'- -GGUAGUGCGGACUGa-AUGCGu-UUGCG- -5'
1076 3' -49.1 NC_000929.1 + 13752 0.68 0.83742
Target:  5'- uCUGUCACGCgugCUGAUUgaagccgccaugACGCcAGCGCg -3'
miRNA:   3'- -GGUAGUGCG---GACUGAa-----------UGCGuUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.