Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 16256 | 0.7 | 0.757424 |
|
Target: 5'- uCCAUC-CGggUGGCUUugGCAAcgguaaagGCGCg -3' miRNA: 3'- -GGUAGuGCggACUGAAugCGUU--------UGCG- -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 18296 | 0.7 | 0.72395 |
|
Target: 5'- cUCGUCGCGgCUGGCUgguuuaACGCcgaugAAAUGCa -3' miRNA: 3'- -GGUAGUGCgGACUGAa-----UGCG-----UUUGCG- -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 31037 | 0.71 | 0.701093 |
|
Target: 5'- -aAUCACGUCgcugaUGGCcUGCGCcAGCGCa -3' miRNA: 3'- ggUAGUGCGG-----ACUGaAUGCGuUUGCG- -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 18279 | 0.71 | 0.689542 |
|
Target: 5'- aUCAgCACGuCCUGGUUgagcGCGCGAACGCc -3' miRNA: 3'- -GGUaGUGC-GGACUGAa---UGCGUUUGCG- -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 12344 | 0.72 | 0.635806 |
|
Target: 5'- uCCAUCACGCCUccugucaugcacgggGACgaggACGCuugacaccggcAACGCg -3' miRNA: 3'- -GGUAGUGCGGA---------------CUGaa--UGCGu----------UUGCG- -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 13710 | 0.73 | 0.561128 |
|
Target: 5'- gCCAUCACGCCaGGCUUuuucCGCuuccGGCGa -3' miRNA: 3'- -GGUAGUGCGGaCUGAAu---GCGu---UUGCg -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 5243 | 0.74 | 0.493429 |
|
Target: 5'- gCCAUUGCGUCUGGCgaUGCGUuuAACGUg -3' miRNA: 3'- -GGUAGUGCGGACUGa-AUGCGu-UUGCG- -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 28837 | 0.76 | 0.409576 |
|
Target: 5'- gCGUCguguGCGCCUGauGCUUGCGC--GCGCu -3' miRNA: 3'- gGUAG----UGCGGAC--UGAAUGCGuuUGCG- -5' |
|||||||
| 1076 | 3' | -49.1 | NC_000929.1 | + | 13986 | 1.16 | 0.001014 |
|
Target: 5'- gCCAUCACGCCUGACUUACGCAAACGCg -3' miRNA: 3'- -GGUAGUGCGGACUGAAUGCGUUUGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home