Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1082 | 5' | -49.8 | NC_000929.1 | + | 27091 | 0.66 | 0.890912 |
Target: 5'- cGCAGACAU-ACCGGgcaGAAgcugccagcCAGGCAc- -3' miRNA: 3'- -CGUCUGUAgUGGCUa--CUU---------GUCCGUug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23440 | 0.66 | 0.890912 |
Target: 5'- gGCAGGCGgaugaACCGAaaAACGacGGCGGCg -3' miRNA: 3'- -CGUCUGUag---UGGCUacUUGU--CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 16487 | 0.66 | 0.882976 |
Target: 5'- gGCAGuACGUUGCCGuuAUGGAU-GGCAGa -3' miRNA: 3'- -CGUC-UGUAGUGGC--UACUUGuCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 26104 | 0.66 | 0.880537 |
Target: 5'- cCAGuucccGCGUCACCGAggaugguauggggcUGAauauuuacGCGGGCGAUa -3' miRNA: 3'- cGUC-----UGUAGUGGCU--------------ACU--------UGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 21632 | 0.66 | 0.874742 |
Target: 5'- ---cACAUCACCGGcu-GCAaGGCGACg -3' miRNA: 3'- cgucUGUAGUGGCUacuUGU-CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 21226 | 0.66 | 0.874742 |
Target: 5'- uCAGACGUuuggcccgacCACCGG-GAugAGGCuGACg -3' miRNA: 3'- cGUCUGUA----------GUGGCUaCUugUCCG-UUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 6238 | 0.66 | 0.874742 |
Target: 5'- cGCAGGCGUUGCCG--GAAuuacaguuaaauCAGGCAu- -3' miRNA: 3'- -CGUCUGUAGUGGCuaCUU------------GUCCGUug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23912 | 0.66 | 0.866218 |
Target: 5'- gGCGG-CAUCGCUGAcacaaGAACggGGGCGAg -3' miRNA: 3'- -CGUCuGUAGUGGCUa----CUUG--UCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 21574 | 0.66 | 0.866218 |
Target: 5'- uCAGACGccaguaauuUCAUCG-UGAGCGGGUcACg -3' miRNA: 3'- cGUCUGU---------AGUGGCuACUUGUCCGuUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 24723 | 0.66 | 0.856515 |
Target: 5'- aGCAGguugGCAUcCGCCGcuGUGAuuugcugGCGGGCAAa -3' miRNA: 3'- -CGUC----UGUA-GUGGC--UACU-------UGUCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 27229 | 0.67 | 0.848331 |
Target: 5'- -gGGGCAUCcaguACaGGUGcACGGGCGGCa -3' miRNA: 3'- cgUCUGUAG----UGgCUACuUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 32079 | 0.67 | 0.842756 |
Target: 5'- uGCcGACAgcgaCACUGAuucauacaugugguuUGaAACAGGCGACa -3' miRNA: 3'- -CGuCUGUa---GUGGCU---------------AC-UUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 28493 | 0.67 | 0.829393 |
Target: 5'- gGCAGAaauUgACgGAUGGacucgcaaggACGGGCAACu -3' miRNA: 3'- -CGUCUgu-AgUGgCUACU----------UGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 17515 | 0.67 | 0.819558 |
Target: 5'- cGCAGcCAUCACuCGggGAAUGGcGCGGu -3' miRNA: 3'- -CGUCuGUAGUG-GCuaCUUGUC-CGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 11646 | 0.67 | 0.809495 |
Target: 5'- gGCGGGuCAUaCGCCGccGGGCGGGgAAUa -3' miRNA: 3'- -CGUCU-GUA-GUGGCuaCUUGUCCgUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 12815 | 0.68 | 0.799216 |
Target: 5'- gGCAGgaugGCAUCAgCGAaGAGCuGGaGCAGCg -3' miRNA: 3'- -CGUC----UGUAGUgGCUaCUUG-UC-CGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 7200 | 0.68 | 0.788734 |
Target: 5'- cGCGGAUAccugcUCAUCucaggGAGCAGGCAAg -3' miRNA: 3'- -CGUCUGU-----AGUGGcua--CUUGUCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 15866 | 0.68 | 0.756211 |
Target: 5'- -uGGGCGucUCACCGGaaGACuGGCAGCg -3' miRNA: 3'- cgUCUGU--AGUGGCUacUUGuCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 11381 | 0.68 | 0.756211 |
Target: 5'- gGCAGGauCAcCACCGAUGGcACGGGUg-- -3' miRNA: 3'- -CGUCU--GUaGUGGCUACU-UGUCCGuug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23686 | 0.68 | 0.756211 |
Target: 5'- uCAGucuCGUCACCGGUGccgaacGGCAGGCc-- -3' miRNA: 3'- cGUCu--GUAGUGGCUAC------UUGUCCGuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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