miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1082 5' -49.8 NC_000929.1 + 23440 0.66 0.890912
Target:  5'- gGCAGGCGgaugaACCGAaaAACGacGGCGGCg -3'
miRNA:   3'- -CGUCUGUag---UGGCUacUUGU--CCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 27091 0.66 0.890912
Target:  5'- cGCAGACAU-ACCGGgcaGAAgcugccagcCAGGCAc- -3'
miRNA:   3'- -CGUCUGUAgUGGCUa--CUU---------GUCCGUug -5'
1082 5' -49.8 NC_000929.1 + 16487 0.66 0.882976
Target:  5'- gGCAGuACGUUGCCGuuAUGGAU-GGCAGa -3'
miRNA:   3'- -CGUC-UGUAGUGGC--UACUUGuCCGUUg -5'
1082 5' -49.8 NC_000929.1 + 26104 0.66 0.880537
Target:  5'- cCAGuucccGCGUCACCGAggaugguauggggcUGAauauuuacGCGGGCGAUa -3'
miRNA:   3'- cGUC-----UGUAGUGGCU--------------ACU--------UGUCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 21632 0.66 0.874742
Target:  5'- ---cACAUCACCGGcu-GCAaGGCGACg -3'
miRNA:   3'- cgucUGUAGUGGCUacuUGU-CCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 6238 0.66 0.874742
Target:  5'- cGCAGGCGUUGCCG--GAAuuacaguuaaauCAGGCAu- -3'
miRNA:   3'- -CGUCUGUAGUGGCuaCUU------------GUCCGUug -5'
1082 5' -49.8 NC_000929.1 + 21226 0.66 0.874742
Target:  5'- uCAGACGUuuggcccgacCACCGG-GAugAGGCuGACg -3'
miRNA:   3'- cGUCUGUA----------GUGGCUaCUugUCCG-UUG- -5'
1082 5' -49.8 NC_000929.1 + 23912 0.66 0.866218
Target:  5'- gGCGG-CAUCGCUGAcacaaGAACggGGGCGAg -3'
miRNA:   3'- -CGUCuGUAGUGGCUa----CUUG--UCCGUUg -5'
1082 5' -49.8 NC_000929.1 + 21574 0.66 0.866218
Target:  5'- uCAGACGccaguaauuUCAUCG-UGAGCGGGUcACg -3'
miRNA:   3'- cGUCUGU---------AGUGGCuACUUGUCCGuUG- -5'
1082 5' -49.8 NC_000929.1 + 24723 0.66 0.856515
Target:  5'- aGCAGguugGCAUcCGCCGcuGUGAuuugcugGCGGGCAAa -3'
miRNA:   3'- -CGUC----UGUA-GUGGC--UACU-------UGUCCGUUg -5'
1082 5' -49.8 NC_000929.1 + 27229 0.67 0.848331
Target:  5'- -gGGGCAUCcaguACaGGUGcACGGGCGGCa -3'
miRNA:   3'- cgUCUGUAG----UGgCUACuUGUCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 32079 0.67 0.842756
Target:  5'- uGCcGACAgcgaCACUGAuucauacaugugguuUGaAACAGGCGACa -3'
miRNA:   3'- -CGuCUGUa---GUGGCU---------------AC-UUGUCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 28493 0.67 0.829393
Target:  5'- gGCAGAaauUgACgGAUGGacucgcaaggACGGGCAACu -3'
miRNA:   3'- -CGUCUgu-AgUGgCUACU----------UGUCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 17515 0.67 0.819558
Target:  5'- cGCAGcCAUCACuCGggGAAUGGcGCGGu -3'
miRNA:   3'- -CGUCuGUAGUG-GCuaCUUGUC-CGUUg -5'
1082 5' -49.8 NC_000929.1 + 11646 0.67 0.809495
Target:  5'- gGCGGGuCAUaCGCCGccGGGCGGGgAAUa -3'
miRNA:   3'- -CGUCU-GUA-GUGGCuaCUUGUCCgUUG- -5'
1082 5' -49.8 NC_000929.1 + 12815 0.68 0.799216
Target:  5'- gGCAGgaugGCAUCAgCGAaGAGCuGGaGCAGCg -3'
miRNA:   3'- -CGUC----UGUAGUgGCUaCUUG-UC-CGUUG- -5'
1082 5' -49.8 NC_000929.1 + 7200 0.68 0.788734
Target:  5'- cGCGGAUAccugcUCAUCucaggGAGCAGGCAAg -3'
miRNA:   3'- -CGUCUGU-----AGUGGcua--CUUGUCCGUUg -5'
1082 5' -49.8 NC_000929.1 + 15866 0.68 0.756211
Target:  5'- -uGGGCGucUCACCGGaaGACuGGCAGCg -3'
miRNA:   3'- cgUCUGU--AGUGGCUacUUGuCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 11381 0.68 0.756211
Target:  5'- gGCAGGauCAcCACCGAUGGcACGGGUg-- -3'
miRNA:   3'- -CGUCU--GUaGUGGCUACU-UGUCCGuug -5'
1082 5' -49.8 NC_000929.1 + 23686 0.68 0.756211
Target:  5'- uCAGucuCGUCACCGGUGccgaacGGCAGGCc-- -3'
miRNA:   3'- cGUCu--GUAGUGGCUAC------UUGUCCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.