Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1082 | 5' | -49.8 | NC_000929.1 | + | 23686 | 0.68 | 0.756211 |
Target: 5'- uCAGucuCGUCACCGGUGccgaacGGCAGGCc-- -3' miRNA: 3'- cGUCu--GUAGUGGCUAC------UUGUCCGuug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 23912 | 0.66 | 0.866218 |
Target: 5'- gGCGG-CAUCGCUGAcacaaGAACggGGGCGAg -3' miRNA: 3'- -CGUCuGUAGUGGCUa----CUUG--UCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 24390 | 0.69 | 0.696933 |
Target: 5'- aGCAGAuCAUCGCC-AUGAACucgcuguaucacGGCGAUa -3' miRNA: 3'- -CGUCU-GUAGUGGcUACUUGu-----------CCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 24723 | 0.66 | 0.856515 |
Target: 5'- aGCAGguugGCAUcCGCCGcuGUGAuuugcugGCGGGCAAa -3' miRNA: 3'- -CGUC----UGUA-GUGGC--UACU-------UGUCCGUUg -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 25847 | 0.74 | 0.425734 |
Target: 5'- aGCAGGCGUCaACCcAUGAaaaaGCAGGCGc- -3' miRNA: 3'- -CGUCUGUAG-UGGcUACU----UGUCCGUug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 26104 | 0.66 | 0.880537 |
Target: 5'- cCAGuucccGCGUCACCGAggaugguauggggcUGAauauuuacGCGGGCGAUa -3' miRNA: 3'- cGUC-----UGUAGUGGCU--------------ACU--------UGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 27091 | 0.66 | 0.890912 |
Target: 5'- cGCAGACAU-ACCGGgcaGAAgcugccagcCAGGCAc- -3' miRNA: 3'- -CGUCUGUAgUGGCUa--CUU---------GUCCGUug -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 27229 | 0.67 | 0.848331 |
Target: 5'- -gGGGCAUCcaguACaGGUGcACGGGCGGCa -3' miRNA: 3'- cgUCUGUAG----UGgCUACuUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 28493 | 0.67 | 0.829393 |
Target: 5'- gGCAGAaauUgACgGAUGGacucgcaaggACGGGCAACu -3' miRNA: 3'- -CGUCUgu-AgUGgCUACU----------UGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 29529 | 0.7 | 0.652253 |
Target: 5'- uCAGAUgAUCGCCgugGAUGGugGGGUGACa -3' miRNA: 3'- cGUCUG-UAGUGG---CUACUugUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 30042 | 0.72 | 0.55796 |
Target: 5'- -gGGGCGUgCGCCGca-AACAGGCGACa -3' miRNA: 3'- cgUCUGUA-GUGGCuacUUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 32079 | 0.67 | 0.842756 |
Target: 5'- uGCcGACAgcgaCACUGAuucauacaugugguuUGaAACAGGCGACa -3' miRNA: 3'- -CGuCUGUa---GUGGCU---------------AC-UUGUCCGUUG- -5' |
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1082 | 5' | -49.8 | NC_000929.1 | + | 32638 | 0.73 | 0.500891 |
Target: 5'- -aGGACAgccaauggCACCGAUGGuCAGGCGuACa -3' miRNA: 3'- cgUCUGUa-------GUGGCUACUuGUCCGU-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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