miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1082 5' -49.8 NC_000929.1 + 29529 0.7 0.652253
Target:  5'- uCAGAUgAUCGCCgugGAUGGugGGGUGACa -3'
miRNA:   3'- cGUCUG-UAGUGG---CUACUugUCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 24390 0.69 0.696933
Target:  5'- aGCAGAuCAUCGCC-AUGAACucgcuguaucacGGCGAUa -3'
miRNA:   3'- -CGUCU-GUAGUGGcUACUUGu-----------CCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 20586 0.69 0.699261
Target:  5'- aGCGGACGggcaGCCgGAUGAugccguggcagaACAGGCAcugGCa -3'
miRNA:   3'- -CGUCUGUag--UGG-CUACU------------UGUCCGU---UG- -5'
1082 5' -49.8 NC_000929.1 + 21574 0.66 0.866218
Target:  5'- uCAGACGccaguaauuUCAUCG-UGAGCGGGUcACg -3'
miRNA:   3'- cGUCUGU---------AGUGGCuACUUGUCCGuUG- -5'
1082 5' -49.8 NC_000929.1 + 24723 0.66 0.856515
Target:  5'- aGCAGguugGCAUcCGCCGcuGUGAuuugcugGCGGGCAAa -3'
miRNA:   3'- -CGUC----UGUA-GUGGC--UACU-------UGUCCGUUg -5'
1082 5' -49.8 NC_000929.1 + 27229 0.67 0.848331
Target:  5'- -gGGGCAUCcaguACaGGUGcACGGGCGGCa -3'
miRNA:   3'- cgUCUGUAG----UGgCUACuUGUCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 17515 0.67 0.819558
Target:  5'- cGCAGcCAUCACuCGggGAAUGGcGCGGu -3'
miRNA:   3'- -CGUCuGUAGUG-GCuaCUUGUC-CGUUg -5'
1082 5' -49.8 NC_000929.1 + 11646 0.67 0.809495
Target:  5'- gGCGGGuCAUaCGCCGccGGGCGGGgAAUa -3'
miRNA:   3'- -CGUCU-GUA-GUGGCuaCUUGUCCgUUG- -5'
1082 5' -49.8 NC_000929.1 + 11381 0.68 0.756211
Target:  5'- gGCAGGauCAcCACCGAUGGcACGGGUg-- -3'
miRNA:   3'- -CGUCU--GUaGUGGCUACU-UGUCCGuug -5'
1082 5' -49.8 NC_000929.1 + 23686 0.68 0.756211
Target:  5'- uCAGucuCGUCACCGGUGccgaacGGCAGGCc-- -3'
miRNA:   3'- cGUCu--GUAGUGGCUAC------UUGUCCGuug -5'
1082 5' -49.8 NC_000929.1 + 10349 0.7 0.674677
Target:  5'- gGCGGGCAauaaucugguagaUCugCGGcugGGACAGGCggUa -3'
miRNA:   3'- -CGUCUGU-------------AGugGCUa--CUUGUCCGuuG- -5'
1082 5' -49.8 NC_000929.1 + 11810 0.74 0.446541
Target:  5'- cCAGACGgcccCACCGGccacAACAGGCAACa -3'
miRNA:   3'- cGUCUGUa---GUGGCUac--UUGUCCGUUG- -5'
1082 5' -49.8 NC_000929.1 + 21632 0.66 0.874742
Target:  5'- ---cACAUCACCGGcu-GCAaGGCGACg -3'
miRNA:   3'- cgucUGUAGUGGCUacuUGU-CCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.