miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 11911 0.66 0.639606
Target:  5'- uCCGGCgauauccggguGCUGucCCAGCGGGUgcagucauuuuCCCa -3'
miRNA:   3'- -GGCCG-----------UGAC--GGUCGUCCGauuuu------GGG- -5'
1088 5' -54.7 NC_000929.1 + 23426 0.72 0.314216
Target:  5'- gCUGGCgaaUGCCuGGCAGGCggauGAACCg -3'
miRNA:   3'- -GGCCGug-ACGG-UCGUCCGau--UUUGGg -5'
1088 5' -54.7 NC_000929.1 + 30119 0.66 0.625918
Target:  5'- gCCGGUACacGCUGGCAGcguGCUGAuggugugguuuacAGCCUg -3'
miRNA:   3'- -GGCCGUGa-CGGUCGUC---CGAUU-------------UUGGG- -5'
1088 5' -54.7 NC_000929.1 + 1950 0.66 0.615657
Target:  5'- aCUGGCAgcCcGCgAGCAuGGCUGGAGuauuCCCu -3'
miRNA:   3'- -GGCCGU--GaCGgUCGU-CCGAUUUU----GGG- -5'
1088 5' -54.7 NC_000929.1 + 30025 0.66 0.59291
Target:  5'- -gGaGCACUGCCGGUucugGGGCgugcGCCg -3'
miRNA:   3'- ggC-CGUGACGGUCG----UCCGauuuUGGg -5'
1088 5' -54.7 NC_000929.1 + 31117 0.73 0.241665
Target:  5'- aCGGCACccuguccgaacGCCAGCGGGCU---GCCg -3'
miRNA:   3'- gGCCGUGa----------CGGUCGUCCGAuuuUGGg -5'
1088 5' -54.7 NC_000929.1 + 25169 0.71 0.336437
Target:  5'- uCUGGC-UUGCCaauaaagcccugagAGCAGGCUGggccguggcaAAACCCu -3'
miRNA:   3'- -GGCCGuGACGG--------------UCGUCCGAU----------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 2556 0.71 0.356253
Target:  5'- gCUGGCGCauauacgggGCCAaauccGCAGGC-AAAACCUg -3'
miRNA:   3'- -GGCCGUGa--------CGGU-----CGUCCGaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 23791 0.7 0.392626
Target:  5'- gCCGaCAgaUUGCCAGCguGGGCUGcaucaaAGGCCCg -3'
miRNA:   3'- -GGCcGU--GACGGUCG--UCCGAU------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 15876 0.69 0.432325
Target:  5'- aCCGGaagACUGgCAGCGuucgguugacccccuGCUGAAACCCg -3'
miRNA:   3'- -GGCCg--UGACgGUCGUc--------------CGAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 2449 0.69 0.450478
Target:  5'- aCUGGaCAagcguugUUGCCGGUaaAGGCUGGGGCCa -3'
miRNA:   3'- -GGCC-GU-------GACGGUCG--UCCGAUUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 17502 0.69 0.451499
Target:  5'- -aGGCAUUugaaCGGCAGGC--AGACCCg -3'
miRNA:   3'- ggCCGUGAcg--GUCGUCCGauUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 14818 0.69 0.461775
Target:  5'- uCCGGCACgugaUGCCAGCgcacAGGagaaaaAAGACgCCg -3'
miRNA:   3'- -GGCCGUG----ACGGUCG----UCCga----UUUUG-GG- -5'
1088 5' -54.7 NC_000929.1 + 19558 0.68 0.472174
Target:  5'- aUGGCACgGgCAGCGcGGUUAAuACCUc -3'
miRNA:   3'- gGCCGUGaCgGUCGU-CCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 11028 0.68 0.504051
Target:  5'- -gGGUugUGgCA-CAGGCUGGAcagcACCCg -3'
miRNA:   3'- ggCCGugACgGUcGUCCGAUUU----UGGG- -5'
1088 5' -54.7 NC_000929.1 + 18929 0.68 0.514884
Target:  5'- gCGGCACUGUCGGCAcaGCUugagaaAAAACagCCa -3'
miRNA:   3'- gGCCGUGACGGUCGUc-CGA------UUUUG--GG- -5'
1088 5' -54.7 NC_000929.1 + 20985 0.68 0.525811
Target:  5'- -gGGCAaccCUG-CGGCAGG-UGGAACCCc -3'
miRNA:   3'- ggCCGU---GACgGUCGUCCgAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 17726 0.67 0.559079
Target:  5'- aUGGCACcccGcCCGGCAGGCguu--CCUg -3'
miRNA:   3'- gGCCGUGa--C-GGUCGUCCGauuuuGGG- -5'
1088 5' -54.7 NC_000929.1 + 28183 0.67 0.581585
Target:  5'- gCCGG-GCUGCCAGCAcagccacugauGaGCUGGuuCUCg -3'
miRNA:   3'- -GGCCgUGACGGUCGU-----------C-CGAUUuuGGG- -5'
1088 5' -54.7 NC_000929.1 + 14100 0.66 0.591776
Target:  5'- aCCGGCGCUGCauuugaugccacCGGUAacggcgguuaucuGGCaGAGGCCg -3'
miRNA:   3'- -GGCCGUGACG------------GUCGU-------------CCGaUUUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.