miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 19558 0.68 0.472174
Target:  5'- aUGGCACgGgCAGCGcGGUUAAuACCUc -3'
miRNA:   3'- gGCCGUGaCgGUCGU-CCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 19810 0.68 0.525811
Target:  5'- aCCGGCA--GCaCGGCGGGUgcuGGCaCCa -3'
miRNA:   3'- -GGCCGUgaCG-GUCGUCCGauuUUG-GG- -5'
1088 5' -54.7 NC_000929.1 + 20985 0.68 0.525811
Target:  5'- -gGGCAaccCUG-CGGCAGG-UGGAACCCc -3'
miRNA:   3'- ggCCGU---GACgGUCGUCCgAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 21055 0.67 0.581585
Target:  5'- gCCGGUAagggguuccacCUGCC-GCAGGgUu--GCCCc -3'
miRNA:   3'- -GGCCGU-----------GACGGuCGUCCgAuuuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 23426 0.72 0.314216
Target:  5'- gCUGGCgaaUGCCuGGCAGGCggauGAACCg -3'
miRNA:   3'- -GGCCGug-ACGG-UCGUCCGau--UUUGGg -5'
1088 5' -54.7 NC_000929.1 + 23791 0.7 0.392626
Target:  5'- gCCGaCAgaUUGCCAGCguGGGCUGcaucaaAGGCCCg -3'
miRNA:   3'- -GGCcGU--GACGGUCG--UCCGAU------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 24046 1.13 0.000311
Target:  5'- uCCGGCACUGCCAGCAGGCUAAAACCCu -3'
miRNA:   3'- -GGCCGUGACGGUCGUCCGAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 24096 0.7 0.399235
Target:  5'- gCUGGCAgUGCCggaaaaagcgggacAGCGGGagagacAAGGCCCa -3'
miRNA:   3'- -GGCCGUgACGG--------------UCGUCCga----UUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 24736 0.71 0.347538
Target:  5'- aCCGuaACcgGUCAGCAGGUUGGcAUCCg -3'
miRNA:   3'- -GGCcgUGa-CGGUCGUCCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 25169 0.71 0.336437
Target:  5'- uCUGGC-UUGCCaauaaagcccugagAGCAGGCUGggccguggcaAAACCCu -3'
miRNA:   3'- -GGCCGuGACGG--------------UCGUCCGAU----------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 25539 0.75 0.17855
Target:  5'- -aGGUAaUGCCAGC-GGCUGugGCCCg -3'
miRNA:   3'- ggCCGUgACGGUCGuCCGAUuuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 25583 0.7 0.392626
Target:  5'- aCCGGUAC-GCCGGguGGggGuAAugCCa -3'
miRNA:   3'- -GGCCGUGaCGGUCguCCgaU-UUugGG- -5'
1088 5' -54.7 NC_000929.1 + 25659 0.67 0.559079
Target:  5'- cCCGGCagcACUGCCugcaAGCcuGCUcagAAGACCg -3'
miRNA:   3'- -GGCCG---UGACGG----UCGucCGA---UUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 25931 0.68 0.490118
Target:  5'- aCCGGCuguACUGCCAauuGCgccugcuuuuucauGGGUUGAcGCCUg -3'
miRNA:   3'- -GGCCG---UGACGGU---CG--------------UCCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 26012 0.69 0.452521
Target:  5'- cCCGGCgacACUGcCCAGCGuGGCaccagcaaccguACCCa -3'
miRNA:   3'- -GGCCG---UGAC-GGUCGU-CCGauuu--------UGGG- -5'
1088 5' -54.7 NC_000929.1 + 26696 0.66 0.59291
Target:  5'- aCGGcCugUGCCGGUAcGGCUGcacuGGugUCu -3'
miRNA:   3'- gGCC-GugACGGUCGU-CCGAU----UUugGG- -5'
1088 5' -54.7 NC_000929.1 + 27100 0.71 0.347538
Target:  5'- aCCGGgcagaaGCUGCCAGCcAGGCacuGACUg -3'
miRNA:   3'- -GGCCg-----UGACGGUCG-UCCGauuUUGGg -5'
1088 5' -54.7 NC_000929.1 + 27204 0.76 0.173114
Target:  5'- aCCGGCACaGCCAGCGGGgccagcagcacauCUGcuACCg -3'
miRNA:   3'- -GGCCGUGaCGGUCGUCC-------------GAUuuUGGg -5'
1088 5' -54.7 NC_000929.1 + 27254 0.67 0.559079
Target:  5'- gCUGGCugUGCCGGUuguGGUggacgGGGcAUCCa -3'
miRNA:   3'- -GGCCGugACGGUCGu--CCGa----UUU-UGGG- -5'
1088 5' -54.7 NC_000929.1 + 28183 0.67 0.581585
Target:  5'- gCCGG-GCUGCCAGCAcagccacugauGaGCUGGuuCUCg -3'
miRNA:   3'- -GGCCgUGACGGUCGU-----------C-CGAUUuuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.