miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 1950 0.66 0.615657
Target:  5'- aCUGGCAgcCcGCgAGCAuGGCUGGAGuauuCCCu -3'
miRNA:   3'- -GGCCGU--GaCGgUCGU-CCGAUUUU----GGG- -5'
1088 5' -54.7 NC_000929.1 + 2449 0.69 0.450478
Target:  5'- aCUGGaCAagcguugUUGCCGGUaaAGGCUGGGGCCa -3'
miRNA:   3'- -GGCC-GU-------GACGGUCG--UCCGAUUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 2556 0.71 0.356253
Target:  5'- gCUGGCGCauauacgggGCCAaauccGCAGGC-AAAACCUg -3'
miRNA:   3'- -GGCCGUGa--------CGGU-----CGUCCGaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 6969 0.68 0.493318
Target:  5'- cCCGcaGCACUGCUGGCGGG----GACCa -3'
miRNA:   3'- -GGC--CGUGACGGUCGUCCgauuUUGGg -5'
1088 5' -54.7 NC_000929.1 + 8737 0.66 0.627059
Target:  5'- aCCGGacggACUGaCCGGCAaug-GAAGCCCg -3'
miRNA:   3'- -GGCCg---UGAC-GGUCGUccgaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 8856 0.81 0.076909
Target:  5'- uCCGGCACUGCUGGCGGaGCUGAAcgauuuACUg -3'
miRNA:   3'- -GGCCGUGACGGUCGUC-CGAUUU------UGGg -5'
1088 5' -54.7 NC_000929.1 + 11028 0.68 0.504051
Target:  5'- -gGGUugUGgCA-CAGGCUGGAcagcACCCg -3'
miRNA:   3'- ggCCGugACgGUcGUCCGAUUU----UGGG- -5'
1088 5' -54.7 NC_000929.1 + 11537 0.76 0.172141
Target:  5'- gUGGCGCUGCUgcucgcugaacucuGGCAGGggGAuACCCg -3'
miRNA:   3'- gGCCGUGACGG--------------UCGUCCgaUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 11911 0.66 0.639606
Target:  5'- uCCGGCgauauccggguGCUGucCCAGCGGGUgcagucauuuuCCCa -3'
miRNA:   3'- -GGCCG-----------UGAC--GGUCGUCCGauuuu------GGG- -5'
1088 5' -54.7 NC_000929.1 + 13178 0.66 0.591776
Target:  5'- uUCGGCuucGCUGCCgucaugacauugcGGCcuGCUucGGCCCa -3'
miRNA:   3'- -GGCCG---UGACGG-------------UCGucCGAuuUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 14100 0.66 0.591776
Target:  5'- aCCGGCGCUGCauuugaugccacCGGUAacggcgguuaucuGGCaGAGGCCg -3'
miRNA:   3'- -GGCCGUGACG------------GUCGU-------------CCGaUUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 14818 0.69 0.461775
Target:  5'- uCCGGCACgugaUGCCAGCgcacAGGagaaaaAAGACgCCg -3'
miRNA:   3'- -GGCCGUG----ACGGUCG----UCCga----UUUUG-GG- -5'
1088 5' -54.7 NC_000929.1 + 15600 0.69 0.421444
Target:  5'- aCGGUuaauACUGCgGGCAaGCUG--GCCCa -3'
miRNA:   3'- gGCCG----UGACGgUCGUcCGAUuuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 15876 0.69 0.432325
Target:  5'- aCCGGaagACUGgCAGCGuucgguugacccccuGCUGAAACCCg -3'
miRNA:   3'- -GGCCg--UGACgGUCGUc--------------CGAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 16538 0.66 0.638465
Target:  5'- aCGGCaacguACUGCCAGUacGGGUacAAAUCg -3'
miRNA:   3'- gGCCG-----UGACGGUCG--UCCGauUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 17502 0.69 0.451499
Target:  5'- -aGGCAUUugaaCGGCAGGC--AGACCCg -3'
miRNA:   3'- ggCCGUGAcg--GUCGUCCGauUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 17726 0.67 0.559079
Target:  5'- aUGGCACcccGcCCGGCAGGCguu--CCUg -3'
miRNA:   3'- gGCCGUGa--C-GGUCGUCCGauuuuGGG- -5'
1088 5' -54.7 NC_000929.1 + 18172 0.7 0.402089
Target:  5'- aCgGGCACUGaaaugaCCGGCAGGCaauAGCUg -3'
miRNA:   3'- -GgCCGUGAC------GGUCGUCCGauuUUGGg -5'
1088 5' -54.7 NC_000929.1 + 18929 0.68 0.514884
Target:  5'- gCGGCACUGUCGGCAcaGCUugagaaAAAACagCCa -3'
miRNA:   3'- gGCCGUGACGGUCGUc-CGA------UUUUG--GG- -5'
1088 5' -54.7 NC_000929.1 + 19495 0.66 0.627059
Target:  5'- uCCGGCugaACUGCC-GCAGaac--GGCCCa -3'
miRNA:   3'- -GGCCG---UGACGGuCGUCcgauuUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.