Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1088 | 5' | -54.7 | NC_000929.1 | + | 28183 | 0.67 | 0.581585 |
Target: 5'- gCCGG-GCUGCCAGCAcagccacugauGaGCUGGuuCUCg -3' miRNA: 3'- -GGCCgUGACGGUCGU-----------C-CGAUUuuGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 17502 | 0.69 | 0.451499 |
Target: 5'- -aGGCAUUugaaCGGCAGGC--AGACCCg -3' miRNA: 3'- ggCCGUGAcg--GUCGUCCGauUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 14818 | 0.69 | 0.461775 |
Target: 5'- uCCGGCACgugaUGCCAGCgcacAGGagaaaaAAGACgCCg -3' miRNA: 3'- -GGCCGUG----ACGGUCG----UCCga----UUUUG-GG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 19558 | 0.68 | 0.472174 |
Target: 5'- aUGGCACgGgCAGCGcGGUUAAuACCUc -3' miRNA: 3'- gGCCGUGaCgGUCGU-CCGAUUuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 6969 | 0.68 | 0.493318 |
Target: 5'- cCCGcaGCACUGCUGGCGGG----GACCa -3' miRNA: 3'- -GGC--CGUGACGGUCGUCCgauuUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 11028 | 0.68 | 0.504051 |
Target: 5'- -gGGUugUGgCA-CAGGCUGGAcagcACCCg -3' miRNA: 3'- ggCCGugACgGUcGUCCGAUUU----UGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 18929 | 0.68 | 0.514884 |
Target: 5'- gCGGCACUGUCGGCAcaGCUugagaaAAAACagCCa -3' miRNA: 3'- gGCCGUGACGGUCGUc-CGA------UUUUG--GG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 20985 | 0.68 | 0.525811 |
Target: 5'- -gGGCAaccCUG-CGGCAGG-UGGAACCCc -3' miRNA: 3'- ggCCGU---GACgGUCGUCCgAUUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 17726 | 0.67 | 0.559079 |
Target: 5'- aUGGCACcccGcCCGGCAGGCguu--CCUg -3' miRNA: 3'- gGCCGUGa--C-GGUCGUCCGauuuuGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 2449 | 0.69 | 0.450478 |
Target: 5'- aCUGGaCAagcguugUUGCCGGUaaAGGCUGGGGCCa -3' miRNA: 3'- -GGCC-GU-------GACGGUCG--UCCGAUUUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 15876 | 0.69 | 0.432325 |
Target: 5'- aCCGGaagACUGgCAGCGuucgguugacccccuGCUGAAACCCg -3' miRNA: 3'- -GGCCg--UGACgGUCGUc--------------CGAUUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 23791 | 0.7 | 0.392626 |
Target: 5'- gCCGaCAgaUUGCCAGCguGGGCUGcaucaaAGGCCCg -3' miRNA: 3'- -GGCcGU--GACGGUCG--UCCGAU------UUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 8856 | 0.81 | 0.076909 |
Target: 5'- uCCGGCACUGCUGGCGGaGCUGAAcgauuuACUg -3' miRNA: 3'- -GGCCGUGACGGUCGUC-CGAUUU------UGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 11537 | 0.76 | 0.172141 |
Target: 5'- gUGGCGCUGCUgcucgcugaacucuGGCAGGggGAuACCCg -3' miRNA: 3'- gGCCGUGACGG--------------UCGUCCgaUUuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 27204 | 0.76 | 0.173114 |
Target: 5'- aCCGGCACaGCCAGCGGGgccagcagcacauCUGcuACCg -3' miRNA: 3'- -GGCCGUGaCGGUCGUCC-------------GAUuuUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 31117 | 0.73 | 0.241665 |
Target: 5'- aCGGCACccuguccgaacGCCAGCGGGCU---GCCg -3' miRNA: 3'- gGCCGUGa----------CGGUCGUCCGAuuuUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 23426 | 0.72 | 0.314216 |
Target: 5'- gCUGGCgaaUGCCuGGCAGGCggauGAACCg -3' miRNA: 3'- -GGCCGug-ACGG-UCGUCCGau--UUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 25169 | 0.71 | 0.336437 |
Target: 5'- uCUGGC-UUGCCaauaaagcccugagAGCAGGCUGggccguggcaAAACCCu -3' miRNA: 3'- -GGCCGuGACGG--------------UCGUCCGAU----------UUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 27100 | 0.71 | 0.347538 |
Target: 5'- aCCGGgcagaaGCUGCCAGCcAGGCacuGACUg -3' miRNA: 3'- -GGCCg-----UGACGGUCG-UCCGauuUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 2556 | 0.71 | 0.356253 |
Target: 5'- gCUGGCGCauauacgggGCCAaauccGCAGGC-AAAACCUg -3' miRNA: 3'- -GGCCGUGa--------CGGU-----CGUCCGaUUUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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