miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 14100 0.66 0.591776
Target:  5'- aCCGGCGCUGCauuugaugccacCGGUAacggcgguuaucuGGCaGAGGCCg -3'
miRNA:   3'- -GGCCGUGACG------------GUCGU-------------CCGaUUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 26696 0.66 0.59291
Target:  5'- aCGGcCugUGCCGGUAcGGCUGcacuGGugUCu -3'
miRNA:   3'- gGCC-GugACGGUCGU-CCGAU----UUugGG- -5'
1088 5' -54.7 NC_000929.1 + 8737 0.66 0.627059
Target:  5'- aCCGGacggACUGaCCGGCAaug-GAAGCCCg -3'
miRNA:   3'- -GGCCg---UGAC-GGUCGUccgaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 19495 0.66 0.627059
Target:  5'- uCCGGCugaACUGCC-GCAGaac--GGCCCa -3'
miRNA:   3'- -GGCCG---UGACGGuCGUCcgauuUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 16538 0.66 0.638465
Target:  5'- aCGGCaacguACUGCCAGUacGGGUacAAAUCg -3'
miRNA:   3'- gGCCG-----UGACGGUCG--UCCGauUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 13178 0.66 0.591776
Target:  5'- uUCGGCuucGCUGCCgucaugacauugcGGCcuGCUucGGCCCa -3'
miRNA:   3'- -GGCCG---UGACGG-------------UCGucCGAuuUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 11911 0.66 0.639606
Target:  5'- uCCGGCgauauccggguGCUGucCCAGCGGGUgcagucauuuuCCCa -3'
miRNA:   3'- -GGCCG-----------UGAC--GGUCGUCCGauuuu------GGG- -5'
1088 5' -54.7 NC_000929.1 + 30907 0.66 0.627059
Target:  5'- aCGGCcuuucugcaauuACUGCCGucaGGGCUGccuggaauaaAAGCCCc -3'
miRNA:   3'- gGCCG------------UGACGGUcg-UCCGAU----------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 1950 0.66 0.615657
Target:  5'- aCUGGCAgcCcGCgAGCAuGGCUGGAGuauuCCCu -3'
miRNA:   3'- -GGCCGU--GaCGgUCGU-CCGAUUUU----GGG- -5'
1088 5' -54.7 NC_000929.1 + 30119 0.66 0.625918
Target:  5'- gCCGGUACacGCUGGCAGcguGCUGAuggugugguuuacAGCCUg -3'
miRNA:   3'- -GGCCGUGa-CGGUCGUC---CGAUU-------------UUGGG- -5'
1088 5' -54.7 NC_000929.1 + 30025 0.66 0.59291
Target:  5'- -gGaGCACUGCCGGUucugGGGCgugcGCCg -3'
miRNA:   3'- ggC-CGUGACGGUCG----UCCGauuuUGGg -5'
1088 5' -54.7 NC_000929.1 + 17726 0.67 0.559079
Target:  5'- aUGGCACcccGcCCGGCAGGCguu--CCUg -3'
miRNA:   3'- gGCCGUGa--C-GGUCGUCCGauuuuGGG- -5'
1088 5' -54.7 NC_000929.1 + 21055 0.67 0.581585
Target:  5'- gCCGGUAagggguuccacCUGCC-GCAGGgUu--GCCCc -3'
miRNA:   3'- -GGCCGU-----------GACGGuCGUCCgAuuuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 28183 0.67 0.581585
Target:  5'- gCCGG-GCUGCCAGCAcagccacugauGaGCUGGuuCUCg -3'
miRNA:   3'- -GGCCgUGACGGUCGU-----------C-CGAUUuuGGG- -5'
1088 5' -54.7 NC_000929.1 + 25659 0.67 0.559079
Target:  5'- cCCGGCagcACUGCCugcaAGCcuGCUcagAAGACCg -3'
miRNA:   3'- -GGCCG---UGACGG----UCGucCGA---UUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 27254 0.67 0.559079
Target:  5'- gCUGGCugUGCCGGUuguGGUggacgGGGcAUCCa -3'
miRNA:   3'- -GGCCGugACGGUCGu--CCGa----UUU-UGGG- -5'
1088 5' -54.7 NC_000929.1 + 19558 0.68 0.472174
Target:  5'- aUGGCACgGgCAGCGcGGUUAAuACCUc -3'
miRNA:   3'- gGCCGUGaCgGUCGU-CCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 25931 0.68 0.490118
Target:  5'- aCCGGCuguACUGCCAauuGCgccugcuuuuucauGGGUUGAcGCCUg -3'
miRNA:   3'- -GGCCG---UGACGGU---CG--------------UCCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 28723 0.68 0.48269
Target:  5'- aCCGGCACcagaaaGCCuucgcgugguGCaAGGCUGAcgcggguuuucAGCCCg -3'
miRNA:   3'- -GGCCGUGa-----CGGu---------CG-UCCGAUU-----------UUGGG- -5'
1088 5' -54.7 NC_000929.1 + 20985 0.68 0.525811
Target:  5'- -gGGCAaccCUG-CGGCAGG-UGGAACCCc -3'
miRNA:   3'- ggCCGU---GACgGUCGUCCgAUUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.