Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1088 | 5' | -54.7 | NC_000929.1 | + | 14100 | 0.66 | 0.591776 |
Target: 5'- aCCGGCGCUGCauuugaugccacCGGUAacggcgguuaucuGGCaGAGGCCg -3' miRNA: 3'- -GGCCGUGACG------------GUCGU-------------CCGaUUUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 26696 | 0.66 | 0.59291 |
Target: 5'- aCGGcCugUGCCGGUAcGGCUGcacuGGugUCu -3' miRNA: 3'- gGCC-GugACGGUCGU-CCGAU----UUugGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 8737 | 0.66 | 0.627059 |
Target: 5'- aCCGGacggACUGaCCGGCAaug-GAAGCCCg -3' miRNA: 3'- -GGCCg---UGAC-GGUCGUccgaUUUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 19495 | 0.66 | 0.627059 |
Target: 5'- uCCGGCugaACUGCC-GCAGaac--GGCCCa -3' miRNA: 3'- -GGCCG---UGACGGuCGUCcgauuUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 16538 | 0.66 | 0.638465 |
Target: 5'- aCGGCaacguACUGCCAGUacGGGUacAAAUCg -3' miRNA: 3'- gGCCG-----UGACGGUCG--UCCGauUUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 13178 | 0.66 | 0.591776 |
Target: 5'- uUCGGCuucGCUGCCgucaugacauugcGGCcuGCUucGGCCCa -3' miRNA: 3'- -GGCCG---UGACGG-------------UCGucCGAuuUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 11911 | 0.66 | 0.639606 |
Target: 5'- uCCGGCgauauccggguGCUGucCCAGCGGGUgcagucauuuuCCCa -3' miRNA: 3'- -GGCCG-----------UGAC--GGUCGUCCGauuuu------GGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 30907 | 0.66 | 0.627059 |
Target: 5'- aCGGCcuuucugcaauuACUGCCGucaGGGCUGccuggaauaaAAGCCCc -3' miRNA: 3'- gGCCG------------UGACGGUcg-UCCGAU----------UUUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 1950 | 0.66 | 0.615657 |
Target: 5'- aCUGGCAgcCcGCgAGCAuGGCUGGAGuauuCCCu -3' miRNA: 3'- -GGCCGU--GaCGgUCGU-CCGAUUUU----GGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 30119 | 0.66 | 0.625918 |
Target: 5'- gCCGGUACacGCUGGCAGcguGCUGAuggugugguuuacAGCCUg -3' miRNA: 3'- -GGCCGUGa-CGGUCGUC---CGAUU-------------UUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 30025 | 0.66 | 0.59291 |
Target: 5'- -gGaGCACUGCCGGUucugGGGCgugcGCCg -3' miRNA: 3'- ggC-CGUGACGGUCG----UCCGauuuUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 17726 | 0.67 | 0.559079 |
Target: 5'- aUGGCACcccGcCCGGCAGGCguu--CCUg -3' miRNA: 3'- gGCCGUGa--C-GGUCGUCCGauuuuGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 21055 | 0.67 | 0.581585 |
Target: 5'- gCCGGUAagggguuccacCUGCC-GCAGGgUu--GCCCc -3' miRNA: 3'- -GGCCGU-----------GACGGuCGUCCgAuuuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 28183 | 0.67 | 0.581585 |
Target: 5'- gCCGG-GCUGCCAGCAcagccacugauGaGCUGGuuCUCg -3' miRNA: 3'- -GGCCgUGACGGUCGU-----------C-CGAUUuuGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 25659 | 0.67 | 0.559079 |
Target: 5'- cCCGGCagcACUGCCugcaAGCcuGCUcagAAGACCg -3' miRNA: 3'- -GGCCG---UGACGG----UCGucCGA---UUUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 27254 | 0.67 | 0.559079 |
Target: 5'- gCUGGCugUGCCGGUuguGGUggacgGGGcAUCCa -3' miRNA: 3'- -GGCCGugACGGUCGu--CCGa----UUU-UGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 19558 | 0.68 | 0.472174 |
Target: 5'- aUGGCACgGgCAGCGcGGUUAAuACCUc -3' miRNA: 3'- gGCCGUGaCgGUCGU-CCGAUUuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 25931 | 0.68 | 0.490118 |
Target: 5'- aCCGGCuguACUGCCAauuGCgccugcuuuuucauGGGUUGAcGCCUg -3' miRNA: 3'- -GGCCG---UGACGGU---CG--------------UCCGAUUuUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 28723 | 0.68 | 0.48269 |
Target: 5'- aCCGGCACcagaaaGCCuucgcgugguGCaAGGCUGAcgcggguuuucAGCCCg -3' miRNA: 3'- -GGCCGUGa-----CGGu---------CG-UCCGAUU-----------UUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 20985 | 0.68 | 0.525811 |
Target: 5'- -gGGCAaccCUG-CGGCAGG-UGGAACCCc -3' miRNA: 3'- ggCCGU---GACgGUCGUCCgAUUUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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