miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1088 5' -54.7 NC_000929.1 + 24046 1.13 0.000311
Target:  5'- uCCGGCACUGCCAGCAGGCUAAAACCCu -3'
miRNA:   3'- -GGCCGUGACGGUCGUCCGAUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 8856 0.81 0.076909
Target:  5'- uCCGGCACUGCUGGCGGaGCUGAAcgauuuACUg -3'
miRNA:   3'- -GGCCGUGACGGUCGUC-CGAUUU------UGGg -5'
1088 5' -54.7 NC_000929.1 + 11537 0.76 0.172141
Target:  5'- gUGGCGCUGCUgcucgcugaacucuGGCAGGggGAuACCCg -3'
miRNA:   3'- gGCCGUGACGG--------------UCGUCCgaUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 27204 0.76 0.173114
Target:  5'- aCCGGCACaGCCAGCGGGgccagcagcacauCUGcuACCg -3'
miRNA:   3'- -GGCCGUGaCGGUCGUCC-------------GAUuuUGGg -5'
1088 5' -54.7 NC_000929.1 + 25539 0.75 0.17855
Target:  5'- -aGGUAaUGCCAGC-GGCUGugGCCCg -3'
miRNA:   3'- ggCCGUgACGGUCGuCCGAUuuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 28240 0.73 0.254968
Target:  5'- gUGGCugUGCUGGCAgcccGGCUGAAuACCa -3'
miRNA:   3'- gGCCGugACGGUCGU----CCGAUUU-UGGg -5'
1088 5' -54.7 NC_000929.1 + 31117 0.73 0.241665
Target:  5'- aCGGCACccuguccgaacGCCAGCGGGCU---GCCg -3'
miRNA:   3'- gGCCGUGa----------CGGUCGUCCGAuuuUGGg -5'
1088 5' -54.7 NC_000929.1 + 23426 0.72 0.314216
Target:  5'- gCUGGCgaaUGCCuGGCAGGCggauGAACCg -3'
miRNA:   3'- -GGCCGug-ACGG-UCGUCCGau--UUUGGg -5'
1088 5' -54.7 NC_000929.1 + 25169 0.71 0.336437
Target:  5'- uCUGGC-UUGCCaauaaagcccugagAGCAGGCUGggccguggcaAAACCCu -3'
miRNA:   3'- -GGCCGuGACGG--------------UCGUCCGAU----------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 2556 0.71 0.356253
Target:  5'- gCUGGCGCauauacgggGCCAaauccGCAGGC-AAAACCUg -3'
miRNA:   3'- -GGCCGUGa--------CGGU-----CGUCCGaUUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 27100 0.71 0.347538
Target:  5'- aCCGGgcagaaGCUGCCAGCcAGGCacuGACUg -3'
miRNA:   3'- -GGCCg-----UGACGGUCG-UCCGauuUUGGg -5'
1088 5' -54.7 NC_000929.1 + 24736 0.71 0.347538
Target:  5'- aCCGuaACcgGUCAGCAGGUUGGcAUCCg -3'
miRNA:   3'- -GGCcgUGa-CGGUCGUCCGAUUuUGGG- -5'
1088 5' -54.7 NC_000929.1 + 23791 0.7 0.392626
Target:  5'- gCCGaCAgaUUGCCAGCguGGGCUGcaucaaAGGCCCg -3'
miRNA:   3'- -GGCcGU--GACGGUCG--UCCGAU------UUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 24096 0.7 0.399235
Target:  5'- gCUGGCAgUGCCggaaaaagcgggacAGCGGGagagacAAGGCCCa -3'
miRNA:   3'- -GGCCGUgACGG--------------UCGUCCga----UUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 25583 0.7 0.392626
Target:  5'- aCCGGUAC-GCCGGguGGggGuAAugCCa -3'
miRNA:   3'- -GGCCGUGaCGGUCguCCgaU-UUugGG- -5'
1088 5' -54.7 NC_000929.1 + 18172 0.7 0.402089
Target:  5'- aCgGGCACUGaaaugaCCGGCAGGCaauAGCUg -3'
miRNA:   3'- -GgCCGUGAC------GGUCGUCCGauuUUGGg -5'
1088 5' -54.7 NC_000929.1 + 14818 0.69 0.461775
Target:  5'- uCCGGCACgugaUGCCAGCgcacAGGagaaaaAAGACgCCg -3'
miRNA:   3'- -GGCCGUG----ACGGUCG----UCCga----UUUUG-GG- -5'
1088 5' -54.7 NC_000929.1 + 17502 0.69 0.451499
Target:  5'- -aGGCAUUugaaCGGCAGGC--AGACCCg -3'
miRNA:   3'- ggCCGUGAcg--GUCGUCCGauUUUGGG- -5'
1088 5' -54.7 NC_000929.1 + 2449 0.69 0.450478
Target:  5'- aCUGGaCAagcguugUUGCCGGUaaAGGCUGGGGCCa -3'
miRNA:   3'- -GGCC-GU-------GACGGUCG--UCCGAUUUUGGg -5'
1088 5' -54.7 NC_000929.1 + 15876 0.69 0.432325
Target:  5'- aCCGGaagACUGgCAGCGuucgguugacccccuGCUGAAACCCg -3'
miRNA:   3'- -GGCCg--UGACgGUCGUc--------------CGAUUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.